Scaffold Ga0335078_10000044

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000044
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 236333
• Total Scaffold Genes: 221
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 133 (60.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F000870	Metagenome / Metatranscriptome	851	Y
F001950	Metagenome / Metatranscriptome	613	Y
F002831	Metagenome / Metatranscriptome	527	Y
F003354	Metagenome / Metatranscriptome	492	Y
F005581	Metagenome / Metatranscriptome	396	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000044118	F002831	N/A	MRRYNNCVPVPDDSAQKHRRHAVYASETTGLLLIAFLLLILTLVRYWQEIHWNLR
Ga0335078_10000044140	F003354	GGA	MTLKSALQDIKETTLSAVSGLLGKLSYLAFLRRGKGRYEHWGMQLVHGEEASERAIKAAHAEVVARVLQTPLSELLEDLKESSRGSGVPPQVYVEQMRDRVEALLPEGRPDAPTSTHLNSVLLALSQLEQNRGPATRSTS
Ga0335078_10000044202	F001950	AGGAG	MRPSRDFAIFLELFFAVTALAFGQADELSSPPGPLIVHSKFGGQIFGFDIDQNGTEGVLAEAQTLSNGNVAAAVETFDQTTGKILAVLIRSETQDDFITLGVVGQSVGLVEHEHVISFLNVQRTFQTINPLPVNKLTGKWTPPIGTEHLIKEVSRTQGSPNNAVFAYDNSGAFIPYVFSSNVAANTFGPIVKITDSYNFGSVVPPMAYNTETNQAILGGGDGCFGCRPVIGLVDLGTGAFSEFTGIGFGFVNGIAVDSADNIACTTTEDDASVEFYNLTTQTGFTVVLPNSGEQQIFSGADVEYDSIHKLFLVAQPTSSSSPKGSTIYVYDTNGVLQETINGFSFSNTFNVIAAYIALHPSTRTGFVDGPSGNVNEIQGFSY
Ga0335078_1000004421	F000870	GGAG	MEHDGKDHEKLEAKTARELIWTSSHTFQGWTCSQCEWNYPLPEMLSDPEARTAYDRLAAGKFHQHQCADHRERLGGPDQESFTPRIRKLVAQGFKPKDAVELFLQEVALEYRNQPKVLEQAKADGEDFLRRVKAGLI
Ga0335078_1000004435	F005581	N/A	MTPKKEIFDEKYRVVAVEGQSLTIQGVRSGKVLTIVNQTPEVPLTAGDYPPGKLIALSDPTSSPIN
Ga0335078_1000004464	F000136	GAGG	MAKAKLRILYGEGDEDVLKTQAAAMEKAGHSVQPAMGRKAVDEALKKSTFDLVVLGATLTRNDRHHLPYMAKKANGEISVLVLHADGTRHPYVDACVDTGADVEHVLSRIESMGIAGMMPAAKAAGVGK