Scaffold Ga0335078_10000038

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000038
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 248952
• Total Scaffold Genes: 234
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 176 (75.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000078	Metagenome / Metatranscriptome	2550	Y
F001220	Metagenome / Metatranscriptome	744	Y
F007441	Metagenome / Metatranscriptome	351	Y
F011862	Metagenome / Metatranscriptome	286	Y
F014534	Metagenome / Metatranscriptome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000038123	F011862	AGGAGG	MLRRTFLVTLTALTVSAAAAQSSPQRAPEPSRESILHESIVRMVEQVKRADYDGDRAALRRLHDELPTSAAHKSLASRVLYWRGFALWRRAINGFNETPAPTDLETDLNAAIADFQNAIAQDPANVEPKIGEASCVGYLMYVNRKDQGRAQELLQRVIPLTKELQAEAPDNPRFLWIMGPVRWSTPPERGGGQDKAFEIYNRALEIVRKQKPQSDPLEPSWGEPELLMNRAWSNLNRTTPDLKAAAEDAQAALHLVPYWHYVRDILMPQIQAAQAKTH
Ga0335078_10000038140	F000078	GGA	LDNLYCLRCNREIETGHKSVAVYMFAQTVGIRPRQKSAAQRICFCPQCSVSLAMGPPPEGALNIAAWQMIRELVGADPALNEAAWETLRGIVGLLSATGTDGDSRHSAAGGYFEF
Ga0335078_10000038194	F014534	GGAGG	MYGNYLVLCGMVWAQFGAQDAGLELIRAMSSGDQEVRVLARTMLEQAQGGSKELIGQALAEAEISVSMARSCGFDQGQPKGWNNSTWFAPASA
Ga0335078_10000038227	F001220	AGTAG	VTRNCLWGLMLAASGIICAQEAPETQPHLLEVLADKDSRYKIPGLSQPAVTVKAGEPILLRVTARKAKSWNRDGSIHGFSLLRAKDRSKVEGWDLLLKPGTQEFQMTAPQEAGEYVVVCTVVCSEDHEGMRMKFVVVP
Ga0335078_10000038228	F007441	AGGAGG	MIRIIVTHAICVLGLTFAAQAGDSEARTFYGEISDSQCALNVHSLTKSHQEMYKSKSGAAGKTPASCALYCVDRMGGNFVLASKAHVYHLDNQGLARRFVGEKVKVQGVKDAKPDTLHVLNIEKD