Scaffold Ga0335078

Basic Information
Taxon OID	3300032805 Open in IMG/M
Scaffold ID	Ga0335078_10000030 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032805 Open in IMG/M

Scaffold ID

Ga0335078_10000030 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	273312
Total Scaffold Genes	226 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	142 (62.83%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

273312

Total Scaffold Genes

226 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

142 (62.83%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F000299	Metagenome / Metatranscriptome	1341	Y
F001036	Metagenome / Metatranscriptome	796	Y
F009346	Metagenome / Metatranscriptome	319	Y
F087606	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000030120	F001036	GGAGG	MKIRVILLCVALVGPCFSAMPVVAQDTTGKMAMGKEAKWQGHVIRIDSDHSMIDINGGPAPSKTARKVAFDSSTEWTNMGKPAQMADVKEGAFVILVGHVDDKGILHATRVDLRLPR
Ga0335078_10000030171	F000299	GGGGG	MGNAQNTTGSLTPIERYDLTHVQEVIRQAHAELRQLLQQRAEIMKRIGTVKQTISGLANLFGDAVLNDELLELVDRKSSGRQPGFTKACRMILMESGRALNSRDICDYFQARMPELLARHKDPMASVTTVLNRLVDYGEAEAVLANGRRAWRWLADVPAAPAPDSTLSRSIA
Ga0335078_10000030219	F087606	N/A	MNQTLSRTGLYWVAGAYAAVVALATVLVVARYLQYVTHPADVAQYGGMWAGGDLMLEVFICGLLLVVTFVFVLVIFKDESAYTVYSKVLLGLSLTAPLSVGIIGIDAVTQGTGWFGSACMYRLFASPLVIIGLGMSRLFARFSRAKRLVSYSLLIEGLTLVGMLALLGGLEHFHLGTP
Ga0335078_1000003081	F000214	AGG	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKENMSEMTKPALATAVNGPQPTARIPVPTAPTIPAPQPVRAAGWDDTAKRWP
Ga0335078_1000003088	F009346	GGA	MSFEEALALASRDEGFKATVYAMNTLLIHKGIYTQQEFRALFVEWVEKEQRRKALDPGHAQASSVYSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335078_10000030

Overview

Ecosystem & Geography

Associated Families

Sequences