Scaffold Ga0335078_10000021

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000021
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 307151
• Total Scaffold Genes: 260
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 172 (66.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000260	Metagenome / Metatranscriptome	1431	Y
F000508	Metagenome / Metatranscriptome	1069	Y
F003854	Metagenome / Metatranscriptome	465	Y
F094757	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000021139	F094757	AGG	MKSVHLIFAFFLLSLTCAYGQMVVISAPPKDPDVKPEQQTAKIVHYLKMRATARSTIRVLALALENGGSRPRLNEAINNEEDIVGWANWCIVALRDKTADANACVFQPDPR
Ga0335078_1000002133	F000508	AGGGGG	MTNLNKVVTSLRSEYSRLQKEMERVGKALNALGGASGTMPRTKRVLSKEARRRIAEAQRQRWAKVRKAKQAKAS
Ga0335078_1000002150	F003854	AGGAGG	MLATRHRFERNPYFQFHPLHTAFSLLGALILFGMLVWVLAVPAR
Ga0335078_1000002188	F000260	GGAGG	MNWKRLILAVLTALAMMAATYVLPRGGPLREASLAQFPMTVGVWAIFVLLFVKLK