Scaffold Ga0335078

Basic Information
Taxon OID	3300032805 Open in IMG/M
Scaffold ID	Ga0335078_10000019 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032805 Open in IMG/M

Scaffold ID

Ga0335078_10000019 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	314181
Total Scaffold Genes	292 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	232 (79.45%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

314181

Total Scaffold Genes

292 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

232 (79.45%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000138	Metagenome / Metatranscriptome	1954	Y
F000238	Metagenome / Metatranscriptome	1494	Y
F000348	Metagenome / Metatranscriptome	1250	Y
F000530	Metagenome / Metatranscriptome	1047	Y
F000872	Metagenome / Metatranscriptome	851	Y
F005270	Metagenome / Metatranscriptome	406	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000019110	F000530	GAGG	LIHAMADEIESSARLLPPAPTRESKLVERPFRVKLRGSVLVLVRLPNKRSLQAAFHQLSTSGGVIHFEKPLDEKLEVELIFHIRDTTIRSKAQMLFPMWATQGWMQPFRFVDLPEESRGILDGALKTFLGESASGAAAGR
Ga0335078_10000019134	F000238	GGAG	MARTNRSPRWYGVPARIFVVTFIGTLLCFAVSLLLGILGVVGVSLVRGMHPDMRIAYRMIALPSALVAGSIILVLAVVMEVRHYRQTKTLTAIERMS
Ga0335078_10000019175	F000348	GGA	LKKALLILAGVILIPLLVVSFVRAAGDWRLVGQTEAGDRVSVSSVRVLKNNQRSALVRVEYKEPTELPQGGPFVEMRARVRFACSNGQATPTTEWFYSRDHTGRFVVSKKATRDDQFGKAPEGNFADLASKAVCSQSK
Ga0335078_1000001921	F000872	GGAGG	VSKTAAALLAFAGWFLCSIPMSAQFNGLLPNGNAYAGVSYAQLSNVVIKQSYRGWTGSYEALPFSRYPRVGLVADVSGFYRNNGLVQYNLVGGPRVSVNYGKWRPFVQAMVGIRHLNSGGFVYNPLEIDVGGGVDYKLWFKNFSWRFQGDYMHTHYLSATQNDYRTSTGIVWRF
Ga0335078_10000019237	F000138	AGGAG	MHTLQMVNSFRVQWGTLISYIPVIATIVTTFFSIILARATLRYVEATDKGLALAREEFEREWTPDLHIKMERVSSEEARIVVTNLAKASVLLQLLQLRKLSHAMPFERCRLNDPLVGGMTWSADMGKRILSCTGYDFEGPIAAAMTFYASGRMFRTDWFRAQIQVREGRIVSLEPSTMPTRRVRQVERKGAERRREFVQDVTASSESEPIKVKKDENFFVTGA
Ga0335078_10000019278	F005270	GGA	MENDSNSSPVDLSSIVASLEPDQLISAKEKLHCPRRQLTGTEMILFWALRIYLVFMFAIVLYQVFTTVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335078_10000019

Overview

Ecosystem & Geography

Associated Families

Sequences