NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000018

Scaffold Ga0335078_10000018


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000018 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)315599
Total Scaffold Genes288 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)229 (79.51%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003395Metagenome / Metatranscriptome489Y
F010701Metagenome / Metatranscriptome300Y
F012173Metagenome / Metatranscriptome283Y
F012698Metagenome / Metatranscriptome278Y
F019184Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_100000181F003395N/ATSGGVTASTEMLAAKRHAGVHTPVIVGKMIIANQQMAYAA
Ga0335078_10000018196F012698GAGGMTSQGSASIEMCTSVKRLGFAARQSIRLYGEEFELLSDPFPEAGGIAVQVKAKRTADVRVLQLPATVVQAVRGSRTAA
Ga0335078_1000001834F012173GGAMRTATVGVGMNTPLLPLPISAPIPDAVKKKRVLLIDTSHAKRDLRAEVLRKLGIDVDSAADIMEARLWWKPALYDLVLINMEKGRGQRDKFCDDVRGATPPQRLAFLVGRPEYLAALPNAEEELAAENGDEQDAIRAKSIGATDPGDTTQRWGILEASRRISAVRSASIARTQAIRALPPPPRDSEGRTAKPTTTPTSLDDLLKEELR
Ga0335078_1000001859F019184GAGMATKYRVVQVKGAKPEKFIVVGIDFEKNAIISTSEAMLETEMRGYLQKAGASEKDIRSWLDQARKYPG
Ga0335078_1000001876F010701GGAGGVSLLLLIGLGAIGWAGYSVVTGKGYYKGCPPEGYDRVEDPFKFWAPTIIIFCAGLFAILVSLGVVGLPRR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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