Scaffold Ga0335078

Basic Information
Taxon OID	3300032805 Open in IMG/M
Scaffold ID	Ga0335078_10000014 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032805 Open in IMG/M

Scaffold ID

Ga0335078_10000014 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	343853
Total Scaffold Genes	321 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	210 (65.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

343853

Total Scaffold Genes

321 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

210 (65.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000136	Metagenome / Metatranscriptome	1961	Y
F000138	Metagenome / Metatranscriptome	1954	Y
F000530	Metagenome / Metatranscriptome	1047	Y
F000870	Metagenome / Metatranscriptome	851	Y
F000883	Metagenome / Metatranscriptome	849	Y
F001511	Metagenome / Metatranscriptome	680	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000014101	F001511	AGGAGG	MEFVMFEDVDGMEVFVNPEHVIWVREYPNQTTVISCGHDDKFAVRLAPAHAVAALGKTAR
Ga0335078_10000014119	F000138	AGGAG	MHTMQMMNSLRLPFTTLVSYVPVLATIVTTLFSVVLARATLRYVEATDRSLELAREEFEREWNPDLHIKMERVSPTEARVIVTNLAKTSVLLQLLQLRKLSHAMPFERCRLNDPLVGGTTWSQEMGRRIVGCTGAEFEGPIAAAMTFYAAGRMYRTDWFRSQIHVRDGRIVSLEPSNMPTRRVRVVERKGPERRREFVQDVTADVVPKKTEEKPEESFFVTGA
Ga0335078_10000014173	F000883	GGAG	MSGQVVLYFEDQADALRFALAAGSVMAGDGAKFSDDLIEETSRVTRIRLDAVNAGSPKKPNPGRAA
Ga0335078_10000014178	F000530	N/A	MDDQAESTARETSGNSSNKLVERPFRVKLRGSILVLVRLPNRRDVRAAIHQLSTTGGVIHLAKPLDEKLEVEMIFHIDQSTIRGKAQMLFPMWATQGWMQPFRFVDLSADSLAALKSSLKSFVGGAERSAAAGS
Ga0335078_10000014260	F000870	GGA	MPLMDDRSSNSNLHAKSGREILWTVDRSFQGWTCSQCEWNYPLPTLLNDPEAKTAYDRLAASKFREHNCSDHLVRVPISGPDSFTARIRKMVAHGFKPKDAVELLLQEVALESPNQPQVLAQARAEGEDFLRRLRAGLI
Ga0335078_10000014272	F000136	GAGG	MAKGKLRILYGEGEEEILKPQAAAMEKAGHTVQAAVGRKGVETALKNGAFDLVVLGSSLTRNDRHHLPYMVKKANSETSVLVMHADGSRHPYVDACTDTGASLESVLARIESMKIAGMMPAAAAAGAGR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335078_10000014

Overview

Ecosystem & Geography

Associated Families

Sequences