Scaffold Ga0335078_10000012

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000012
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 376266
• Total Scaffold Genes: 333
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 206 (61.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000260	Metagenome / Metatranscriptome	1431	Y
F000279	Metagenome / Metatranscriptome	1383	Y
F000602	Metagenome / Metatranscriptome	995	Y
F000749	Metagenome / Metatranscriptome	908	Y
F001102	Metagenome / Metatranscriptome	777	Y
F012141	Metagenome / Metatranscriptome	283	Y
F047844	Metagenome / Metatranscriptome	149	Y
F087522	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000012149	F000749	AGGAG	MSGRSLPLGIRPSVTIRVSGKLFREHLPYLEQLVESALDCQLWPLLSLAGLEDVDSDALIFLTQGEDRNFGIVSCPNFIREWMKREKGRAA
Ga0335078_10000012176	F001102	AGGAG	MVPAVRKQVDVARLTADLAAAAVELLSAQCASDRIRLQYSPQDIVKFGDPQTLHRALNSVEALNRFFSQISAQMRQHDGERNRKA
Ga0335078_10000012206	F012141	GGAG	MGDRYWLWVVVRLMIGVAIVGWAFSYLGTGSGEKEFQKSLDAMKQVRSFRATFAANPATQEHEMLWEVDCARDIVHWKEHFADTGRNPPAELDRDEVFIGGRDFHRASDGSWTQQGSPYMTTTAHWYCTNLAQGTDTNVLPRIATMIKRGILQKGDKKTVNGVRCREWLVTLKGGTSGLEHDTVCLGLDDHLPYELTVDWEHSRSSFSDYNTSIQFDLPEAALQPTATAGSN
Ga0335078_10000012207	F047844	GAG	MAKAENTGLHSQVRSVTNTLAGCCRVLAAVVLISYLIPSAVAQDSENAAPSLGDVARQARTQHPSDAQPSKAQVLVDDMQSQQEAAQNAPTGFTNYDAGEYRLFVPYPFSLEGRDNGGPVLMGSRLGVTNTEVLAGVPISIPSDLSDIDLANLVRELAALHGRYASCSPARLSTHKAFLCYWNDTPYLLGHQVWGNMEIVVGSSSLIPVMCVSPDEFQCLGYDQFGYHTCNNRNPSWQEVQETKGAIATRFRDELTTKQMCEQIIYPSIQLKEDIVVHPAAIREEKPGKPPTPVPQDISVAASGEQTPSLGDLARRTRQAPHAPARASLVNSEGGAAAPAGYQSFVVTYCQNPEHCSEATVVIPEKAEVVSRVNGQHIFKATLNGSPVMLYAGPADVNAPYRSMTDPDYIRLRDLANANGWSREKTDGVSTQELSIDGLPALMTRFRYQRDQKRWWVGERALIDMPESPYIKEGSQFLIGCTAPEETFAEAEALCTTLVNSLRLP
Ga0335078_10000012208	F087522	N/A	MKTTSILAAAGPALLLVASLGASVFAQQSRPGPKILLQAEWKTNETVRYELQAGASFLPIADVTGAALFPPRGPCDYSLAAVVTLRALAPDKDGNTPVEARYTDTRVTSVRCALFSASDFQKRLAGLQASAVRFRVGPHGETALSRGNDGYFKYWDGGDLLRKVTQDLLQTEFSPRPVAAGDSWKPRGQFAYSRDKALKDMELSGSDLRFRNLVQIDGKSCAWVTSQYVFSPVDLPAAATTTGGRVVPGAGNNAVAAVLHISLLLDPASHHVAWLHRSQTIDNKLTLASPYDESDPPEKPGEPAPEDWENPMPDLSSLRSDNPGRYPLMTFHFQEEARARLLPEQRSVEWLAALKRFEATPDPTSGAIPVQPTKTLLPSPIIEASKPAIVKRPTRVVIDSDSLVSTPAGFTRYEKGLCRDVWFCATVSIALPGDVDVSEDTPLRTVYLARRGTTMVSVAIGPALDRHDQGLTEDEELKRQADYYLANYIWLAAKPGIGTSFESATFDGYPSLVAEFNATQQDMADMHGLIGLLLTPWGKVVPVSCSSDQPSADSKLLCETIVASVTLRR
Ga0335078_10000012251	F000279	GGAGG	MLMTQTNDHGMEEVVLPEHLLPLGSVLGPGVTALDLCMVLAKIFRVQYTEVALLRLEKGLLRFVFPEYLRTTGAIPLSSKAVAAHTALSKKAEIFNNFAKVKHASIFETIKPGAESESEEPLMPTPIQKLMSVPIMDRDSIVVGVIQISRKGLDPKFAQDFSREDLHDLEIAAGLLSTAPALLEN
Ga0335078_10000012296	F000260	GAGG	MNAKGKFVVGVLTALAMMLLTFALPRGGAMRDAAVVQFPMTVGIWAIFVLLFVKLK
Ga0335078_10000012323	F000602	N/A	MHAMSFPAVVITSFTRTTRAALAAYVGLRTNAAVVFGVAVALLYRSPRQDVYNILWAVVFGFATLNILSLAAKRFEPGRRGLSFGEMMAVMVVIVSVFLLGWEMLNLLHIFPIKLQR