NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000008

Scaffold Ga0335078_10000008


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000008 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)432326
Total Scaffold Genes369 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)257 (69.65%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000426Metagenome / Metatranscriptome1154Y
F000534Metagenome / Metatranscriptome1044Y
F000743Metagenome / Metatranscriptome910Y
F001318Metagenome / Metatranscriptome724Y
F003708Metagenome / Metatranscriptome473Y
F009101Metagenome / Metatranscriptome323Y
F039733Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000008317F003708GGAMSIALSLFLPVVLLGAGPLMLPALHLMPSAFAVEPQSPAADLSPKFLDTLIEPGVSVGPLKIGDSQSRALQLFPRKDEDQQWEDPCGTTFDWVDATNPMGRGDLSIRLKKGKVFQIESATTRFHTAEDITTFDSPEKVEQSYKDLRAFTLLTPPAPSLGDRPLVFWIDKKKGIAFSFAYDPSQRKRYLYKVIVFGPNKEFCPEQEKTSSPKWEEIPQYSVEPPSALSPESSSP
Ga0335078_10000008329F000426AGCAGGMKDIHEVLRQKQAKYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLAEVDEATTPDDAMAAKAGANASAGASRSARPTAPRWP
Ga0335078_10000008344F001318GGAGGMKNRSMKRWLGVLAFFTLVSASTMAQVAASLDSQTGPPGADVSASGSQGWHEAGPGDRMFFPRDMFWGWAQLDLAPPHNEVDPNLCAGNAGQYGGANAPCSLFARYMLSGVLEVRPFGRGPLRRFMVFGAPTFLFGKTIPKTLYTWSPDAIGVEHSWGAGVYIAKGFEFRVTQHFLFDRLGARDTYLGQADLGNNGPWGRYMTVGVRRSFGTRRW
Ga0335078_10000008345F000534AGGMPQEISVSYQAIKSKVYRLIDSLVVGEKNEAEVQESVRRWWALIHPADRPIAQKYLLTVLGRSCSALDAVGDALLSVGSSEPIHVQTHSELSARRMRLVERLVKEAGVRQAV
Ga0335078_10000008362F039733AGGAMKAYFTNLPMRTWLLLVAPAVVIAYPVARLVLPAVMHAVVPQVVRTLLNVI
Ga0335078_100000084F000743N/AMTNKEKKRLSVVLRATEYLFLENIALKLVLDHSQVANWQKLVDHVLSDKEIMAGVGLKFSDLYRELETSKDPAHVLNVFLGGLPATKKPH
Ga0335078_1000000873F009101AGGAGMKRAIRMAILMVGVVGTFLGATVQPVPAADGGPILLCPPGDSHCKPDLPPMMK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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