NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000006

Scaffold Ga0335078_10000006


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000006 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)439848
Total Scaffold Genes403 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)300 (74.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001148Metagenome / Metatranscriptome765Y
F008167Metagenome / Metatranscriptome338Y
F010577Metagenome / Metatranscriptome302Y
F022516Metagenome / Metatranscriptome214Y
F050635Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000006115F010577N/AMAITLTAAVARATSRIAWTRSLIFLQSAILLVLQYSDRYSSKKGNVYNILWVLVFGFATLNILGLIARRFEPRRTGLNFGEILAITVVVVSVFLLSWEMLYTFHILPIRIQGH
Ga0335078_10000006259F001148AGGAGGVKDIHEVLRKKQAEQAQLGKQIEALQTAAEQLRSVAHLLNEEETDREAAVIGG
Ga0335078_10000006314F008167GGAMRVLLVTFLLTLFAFAVGLMLGILGTVIAGRLHGVHPDMTSAYRHVALPVAALVGVLAFVSMAVVEIRRYRQVKALAEIERASR
Ga0335078_10000006345F050635GGAGGVKTAFVKALVCLLVLGAAVNVLAADRSNLILNKTEVIVKHPSGVFVPAVSRDPKLKTIAGDLSTYPYGVFFCCYGYYITGLTNVLGVVPEYWQGVPFTPSANMKVNEVDTSVEYDEGTKEIVLSLNSDSNGLPGKAIHTWKVTNLGTNGGCCQLATGKSKSGIAVKKGQQYWVVVSTNADDASIFASWDVNSTDMRSHPFASYCDDSKQGTCNGVSGQWYATQGILPGFAVLGQ
Ga0335078_10000006388F022516AGGAMMWWFLILASSGGAVLWAGIAAYLRVRRHMKSASQKKGGMERGADNP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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