Scaffold Ga0335078_10000003

Overview

Basic Information

• Taxon OID: 3300032805
• Scaffold ID: Ga0335078_10000003
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 817340
• Total Scaffold Genes: 685
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 445 (64.96%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000595	Metagenome / Metatranscriptome	999	Y
F000969	Metagenome / Metatranscriptome	818	Y
F002981	Metagenome / Metatranscriptome	516	Y
F005420	Metagenome / Metatranscriptome	401	Y
F011701	Metagenome / Metatranscriptome	288	Y
F046546	Metagenome / Metatranscriptome	151	Y
F048481	Metagenome / Metatranscriptome	148	Y
F101589	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335078_10000003163	F002981	GAG	MPDPSSSTPGTPSTPSSPATPVTAAKGPTINIGEEFGTAKKNLPPAKIVLIAVAAVVVVVLIASFLKRAKPQAAGSLDNVAAVEIPGQGSTMVALTFTLRNTSDKILYVHSLQGKIKTGKGESSADAVSAVDFDRYYQAFPALKNGAQPALSPEAKLQPGEAVTRTIIVAFPVTLDAFNQRQSTSVVVWPYDQTLPVVLTK
Ga0335078_1000000323	F046546	AGAAGG	MRSVKFLGLFLCILGVCAIATAGEKNNLGIRDVSRITLADATRVGTALLPAGDYVVRHTMEGQEHIMVFQRSGSKTPQAKVKCTLVPLEHRADQTKTVFTMNAANEKVLQELVFRGDTAKHVF
Ga0335078_10000003347	F000969	GAGG	MINDDVVKCPLCGGFTHIEKPELLSALRDPRLREQIEKYIAELLQSPVDELSTVSATQSGRDFQKDVHNWNPCVPMWRRSPKE
Ga0335078_10000003403	F000595	GGAG	MDGLTGLAAIVMIFGMPTAALAMYTFYRVRKLRTEERLAAIQRGVSVPMEPELSQAAHSRRSGILLVAGAVGYMLAFTILARFEPDAIEAAAFGAIPFTLGLGFFIDSVLIRRDARAS
Ga0335078_10000003424	F048481	N/A	MGLPPEGALNMAAWDMIRDLVSADPSLNEAAWENLRGVVALLGSGEDGAVPISGAKYRRA
Ga0335078_10000003434	F101589	N/A	MNWIAFLLLAIVLAFCGVVYAGCRSWPTMSPRRRTVGALLLMPHFLMIVCIVLSLLCGHPPQGSPCFNRQFACAVLVVFILPLPAFAGTVGALVIFLRSRGAS
Ga0335078_10000003453	F011701	AGGAGG	MKFVRPTRAGLACALFVGLTLAVVTASANTGQKFSGYFDVSGVQEQGDMVQLTLHLQLFNHGSTDLKSVIVTLMDNSPVMTLRGNFQPVQVWKHQQFIEMSQEFTVTKREYAMWTAAGPVAPNLIIIYADGNGKTWQKGVQISHRGLVAADNR
Ga0335078_1000000379	F005420	AGGCGG	MKHWARAIAGTVFFVAIGFAAAGLRAQSAPPTYFANSFRQGETRITEEAFDVKLTPDNATYRERIKDSAGNDRYELTITPQGPEGDARITSWRVRLGDLHHSIYNNILLADQQPTAEAKDNLWWLNPNPFGPVPIRAKRIMKVDGFYVVLQVKNLHFTPLDSPYLDSMEVHFAFSNSDPRNAGH