NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000002

Scaffold Ga0335078_10000002


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000002 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)877494
Total Scaffold Genes902 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)574 (63.64%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004123Metagenome / Metatranscriptome452Y
F005628Metagenome / Metatranscriptome394Y
F031860Metagenome / Metatranscriptome181Y
F068620Metagenome / Metatranscriptome124Y
F087003Metagenome / Metatranscriptome110Y
F100916Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000002263F087003GAGMLFDPVSDGKHVILAMLVVGLVFLAVIALGELAHRVSERRRARKQDAYPY
Ga0335078_10000002287F100916AGGAGMSAVASTAEYAASPPSLEVVAASPAQVAEQEMYRWMMWLGLPSLVAAIFMGAVFATSSIWWVSGALMGVIGLISVVIWLSMTSCTNSN
Ga0335078_1000000230F068620AGGMGAEESELVELTLRGFSPEELKACAEKRCACYGLEVKESQIRPCMVSPGGHVRLYEGRFVATRAV
Ga0335078_10000002856F031860GAGMYADALLLLFELADREDERFQQAAARWHARFVLEAGLPLREAEGVMTLLCRLRGADRLVVRRRLLAAVERAGLTTREIRSGA
Ga0335078_10000002857F004123AGGAGGMPDYRYELRRGDEVIATGHLSREQPIEIGERLKIGGRTGIVREVAPLLGERELRLVVQLTRDELVG
Ga0335078_10000002881F005628AGGAGGMIDALWFRLLGWAERIRREERGDSLVNWVVLAVGLAAAAAAVVALLRPALENAAQSIANFIGGG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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