Scaffold Ga0335079_10061277

Overview

Basic Information

• Taxon OID: 3300032783
• Scaffold ID: Ga0335079_10061277
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4289
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y
F006575	Metagenome / Metatranscriptome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_100612771	F004352	N/A	MMSRPDQDGDQQLRLLDDAWGRAAEHWRDGTARQFGAAQLTPLLQESRSYLEALRKLMDVLEAAERDTEG
Ga0335079_100612772	F002850	N/A	VTGIHADIDALKGLHGALVRYRHAQREVTARSEDQLRVARAALEAKAGHCQTQLELNQAELGACQDRAAREAADEPAGATVDCSGYARAVEQCGERLESIRRWQQRIDAEASEFQGIAGRFTGLLEDELPRMEEHLAAIIASLEAARRVQAPAS
Ga0335079_100612774	F006575	GGAG	MTIEPGTDTSPYLGLRQAVRPAILAHRLLAGDQERAGKLATECEDLLYLTGELLKAAGRARILATPPPPRMPDEGGVLGGGDRQAQLLEAYSDAGLLWAKVVGSSLALAAALIERGEWDDVRALAGFLAGAGEERAADELRIQLGQAAWEAHHEELRAIGNDMPAAAIGPAIDALRAVLREVPEEYPDRNREVNRFLPPLASAIHAIMKEQDAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFEGICPRPGRMTT