Scaffold Ga0335079_10031357

Overview

Basic Information

• Taxon OID: 3300032783
• Scaffold ID: Ga0335079_10031357
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6096
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028766	Metagenome / Metatranscriptome	190	Y
F034586	Metagenome / Metatranscriptome	174	Y
F056801	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_100313572	F028766	GGA	MRKTEALLSEGKVRLEKLAVTMRAAAPAYSALARRRRLMNVEARYADVARRYEMLRAAGTEGIADLKVGLEKAWDAFRLEVGWRDQARTDPPPDRWR
Ga0335079_100313573	F034586	N/A	MRPRDEQYRWWLLDGDLEIVSDGKVRGSSLPAALADLSREIDRLGEEGKRPTRRPYSLIVYRGRDVVAWRPFTLGIC
Ga0335079_100313575	F056801	GGAG	MIADPAWKSALLHKGQDVADMLEAVMSGKEVDLSSLPVPFGPGQDPELRLRNFLDQIDRAIKAFDSDRFGRCQFCGVDLDRRALEQQPWVSSCPAHAGRWIS