Scaffold Ga0335079

Basic Information
Taxon OID	3300032783 Open in IMG/M
Scaffold ID	Ga0335079_10009792 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032783 Open in IMG/M

Scaffold ID

Ga0335079_10009792 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10917
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10917

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000696	Metagenome / Metatranscriptome	931	Y
F000739	Metagenome / Metatranscriptome	913	Y
F000885	Metagenome / Metatranscriptome	849	Y
F001619	Metagenome / Metatranscriptome	662	Y
F006125	Metagenome / Metatranscriptome	381	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_1000979210	F001619	GGA	MLNWFKKFFQTRYVGLLEGEVLRLRAENRALTNSLLGTAGFPPVDFPQTPAAQPLPRVRKRSWHQIQAWRESDAAREAASSLDDRVEARPNGSLRHS
Ga0335079_1000979212	F000885	GGAGG	MATASTTSAHAQFIGEITQICGVISAVAGLVLSLHHWPAAAALLGGGVAFSIGKKLRSQ
Ga0335079_100097922	F006125	AGGAG	MPITISLSPINVDSSASNFVSAIASLSFSGNYPTGGDALDFTQIADKLPSTQIVQAIAESQNGNSGYYVPVQGSALNTWKLKCLQGGGTEISAGAYPSSVTSDIVQLSITARKLL
Ga0335079_100097923	F000696	GGAG	MPVVGSSAYNTAGQITALVRSLLNDAQGNLFTDTVLLPYANSAYRKVQRALGNSGAGGFLSDDVLLVVPAVTTPDASLQVSITDSTAPPNQLPTDLLVPVKLWERPNGSSDDFAEMVDLTRHGGLPSREQDLVLSVWEWRNDGIYFLGATQDTQIRLRYLKAYPDFTDATSPVLVRNSQEAIAYATAALAGWARGSPLSEKWDDAAADAMEDLIVQAVRREQQSSRRRRPFSSRSGYTPF
Ga0335079_100097924	F000739	GGCGG	MTLSRLEIWLKGMLAAAVSGAAGGILTGFAAVGIDPQHFNLQAGMGATFRIGLAAALINAVIGVAAYLQKSPLPTGD
Ga0335079_100097926	F000512	GGAG	VRNLSSCGRNRRQRGILRCAQDDVRHVQTATQVVILRETHETPENVARRLELAGGHNPLGEPNYRAVWGWNRLAWIGGKFEDRDEHGELLRERFELRREPKYPAVNRWHIERWLPPETYGSPLRWYAQTVELANGQSIHALGPYPSRGEYELCFTLETPQGNFVQLTPTIAEHIARAIECSRRISPAAKRTALYEHQGREDRAYESWAYDLLDDAVPAFHKQAFVTAAGG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335079_10009792

Overview

Ecosystem & Geography

Associated Families

Sequences