Scaffold Ga0335079

Basic Information
Taxon OID	3300032783 Open in IMG/M
Scaffold ID	Ga0335079_10006403 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032783 Open in IMG/M

Scaffold ID

Ga0335079_10006403 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13476
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (73.91%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13476

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (73.91%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002288	Metagenome / Metatranscriptome	574	Y
F002929	Metagenome / Metatranscriptome	520	Y
F003851	Metagenome / Metatranscriptome	465	Y
F026325	Metagenome / Metatranscriptome	198	Y
F036259	Metagenome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_1000640311	F026325	GGAGG	MMTDPAFAIKREVHQLVDRQIEKLRPSSCLTTSGLLDCRVRSQKIIVLYQELDQMRRMSFKVQLRTAS
Ga0335079_1000640312	F003851	AGGTGG	MKHRKLAAAACRTIDEDAKRVLRALEEATHNHVNTNDPVMEQLKQCPEASKVGEILGKAFDSLKYAQDESEIGDRYLPPAGTLIPPLV
Ga0335079_1000640316	F002929	AGGTGG	MSQSFRAVKEIWNVHSSCFIEPEKLIVLLHDLAARVGTASDEHEYGDKQAVWLENGRKVLDYMEADERFSVASCHDSMEEQGIAVNRNDLITLIDNMRSLSKQWRSSIGKHGELLFYIDA
Ga0335079_1000640319	F036259	GAG	MFGAHRIGFDWKEIAEVLHLTRAVARPTFWSEIRRSRSKSVAAQPPATVIQDESDPDNLKLGKPRASR
Ga0335079_1000640320	F002288	GGAGG	VCVDGPGTLTAIRIQPPEGSSMGEADGVHKRRMFRWPKEARELVREYKERTSRSQEHTETGRGMLVTKLAAISGNPRDACLRFLRELGVNHKRAYREWTKPEQQRLLDLITAMPVEEAAKILRRPAGSVRSMLHRLGIGGTTGREWFTKFSLSRALHTRPDEIQKWIDMGWLSSRALTAAGTKANVIHADDFCQFVKEHGRAVASRRLTYEALWFVQNYVFPPSHAELLSVRGTYKRHDAGDETDANTESQSACGSEEDGGQEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335079_10006403

Overview

Ecosystem & Geography

Associated Families

Sequences