Scaffold Ga0335079

Basic Information
Taxon OID	3300032783 Open in IMG/M
Scaffold ID	Ga0335079_10000021 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032783 Open in IMG/M

Scaffold ID

Ga0335079_10000021 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	207115
Total Scaffold Genes	179 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	122 (68.16%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

207115

Total Scaffold Genes

179 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

122 (68.16%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000749	Metagenome / Metatranscriptome	908	Y
F000978	Metagenome / Metatranscriptome	815	Y
F001220	Metagenome / Metatranscriptome	744	Y
F002898	Metagenome / Metatranscriptome	522	Y
F004490	Metagenome / Metatranscriptome	436	Y
F009101	Metagenome / Metatranscriptome	323	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_10000021158	F009101	AGGAG	MKRAVRIAVLIVGVVGTYLVAAVPQVPALDGGPILLCPPKQPNCQVNLPPQ
Ga0335079_1000002118	F002898	AGGAG	MPDRKERSRLHRLLDFFKRLLGKKPEHPGDPHAYVTAPVRRGPKGRSGAAVAEIEDDSFESFPPRRS
Ga0335079_1000002138	F000978	AGGAGG	VQPIFCLRCRREIMVGDKSVAVYMFAQTVGVKPRQKSSAQRICFCPQCAVSLAMGMPPEGALNMAAWDMIRDLVSAEPSLNEAAWESLRGVIGLLGSGESSEGSGRYRRAG
Ga0335079_1000002153	F004490	GGA	MECKTKDDLEQHLSDIRRLAVVPGLTAEQMGAVARAERFAIGLLREHYISGHNGKRCPFATITTGTSEI
Ga0335079_1000002160	F000749	AGGAG	MNIRTKSANLARPHVTIRVSGTLSQGHLPYLDQLIHSAAEYRLWPVLNLSNLEELDRAALAYLAEGENRDFEVASCPHFVREWMDHERGNAAAA
Ga0335079_1000002189	F001220	N/A	MTTLHSLNCKLALSACVFALLAPLSRAGEQPRVIELTADKDSRYKIAGQKTPSITVKAGEQILLRVTANRAKTWNRDGSIHGFTLLRAKDRTRVDGWDLLFKPGTQEVLMTAPAEPGDYEAVCTVICSEDHEGMHMKFTVLP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335079_10000021

Overview

Ecosystem & Geography

Associated Families

Sequences