Scaffold Ga0335079

Basic Information
Taxon OID	3300032783 Open in IMG/M
Scaffold ID	Ga0335079_10000007 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032783 Open in IMG/M

Scaffold ID

Ga0335079_10000007 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	372628
Total Scaffold Genes	308 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	189 (61.36%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

372628

Total Scaffold Genes

308 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

189 (61.36%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000299	Metagenome / Metatranscriptome	1341	Y
F000812	Metagenome / Metatranscriptome	881	Y
F003650	Metagenome / Metatranscriptome	475	Y
F045224	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_10000007162	F000299	GGAGG	MENGQKVVGSIRPTERYDVGHVQEVIRQAHDELRQLMQQRAEVMKRIGTVKQTIAGLANLFGDGVLNEELLELVDRKSNGRQPGFTKACRMILMEAGRALSAREICEHFQQKMPSMLARHKDPMASVTTVLNRLVEYGEAQAVLTNSGRRAWRWVAEASVEQLAETQALTSAEGFAAD
Ga0335079_10000007295	F000812	GGA	LSDAASNPPSARKPRRWTIFASGFLLIALAIVVIYTGRGAFFSPLALVVVAAIGLAALLLQLRLRTDIGTPVRSPLWLHVVGLAGAVVAVFADILRLSPGVTLVAALVAVVCFAASGIVVLHALRKVKR
Ga0335079_10000007304	F003650	GGA	MHRSRLLLALTASCFIATAALLLVSCQVYPVHAGQDAQRSGSPQESALVIENESELLDTYPGARYELNFHARGGVPTLHWKLERGAVPEGLRLEEGGLLDGSPGRAGEFQFTISVTDSGKPQQSVQKQFFLRVRSAMTLIWKAAAHVATNRIEGSVEVANTTPDDIDLTFICLAVAAANGRATAIGYQHFVLSRSSTKELPFGESLPSGAYVIHADAIGEVAPKNLIYRERLQTPGALQVQVGP
Ga0335079_1000000758	F045224	N/A	MNDDDEVFSPRLAAGAKQNRGSSYTSKDFQLEVLGQLAEVQALTQGLQEALQLEIKRNHEQNKLLRFDARTLVAVGAIALSLTEYVLQDARNSSKRDAEVETMKARVVQLEELATANTEKRVRMEVQVGDLREQQAEVKRTIEAGGRKATQR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335079_10000007

Overview

Ecosystem & Geography

Associated Families

Sequences