NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10000005

Scaffold Ga0335079_10000005


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10000005 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)529359
Total Scaffold Genes442 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)309 (69.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000530Metagenome / Metatranscriptome1047Y
F000675Metagenome / Metatranscriptome941Y
F001265Metagenome / Metatranscriptome735Y
F004142Metagenome / Metatranscriptome451Y
F075377Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_1000000515F000675GAGGMNQSPDRPFIGPYRCDDCGSEVGFRSRRRTLTERFILPLFLLQPVRCGECFRRDYRLIFTKVRDRLSDTPRILPGKRPVNPNRHVA
Ga0335079_10000005271F001265GGAMVRDDMDDLHRRIERVTDDLRTIQQELNCAAMQAPSDPELMELLSSLSETEPIETLRSALDQMRHFLWFYSQVMENEPELGDKLRQAAGKTESDAKPKLESTFLDHLSRADELVLLHHLAQAKQRKPS
Ga0335079_10000005282F000530N/AMADQTDATPQEPEIHGTKLVPRPFRVKLRGSVLVLVRLPNKRDVQAAFHQLSTSGGVIHLEKPLDEKLNVELIFHIRETTIRGKAQMLFPMWATQGWMQPFRFTDLSDACRETLDVTLKSFLGESAKGAAAGS
Ga0335079_10000005432F075377N/AMKILGAISSLVAAAVLSSALHAQAKPAAPPSDGAKTSRSYSGMYTFLKEGEFVQVTVEDDGRVTGFVSRYGEGDSDKGAFLNQFFKSASLETNKLAFTTEVVHGVSFEFKGTVERGEGKNPGDEAYYILLGTLVENSSDAEKKVTSHTREVLFRSFPQ
Ga0335079_1000000577F004142GGALRQAEGYIATEVNCESASDGKYRVQDFWSWHRGFEIFREGRSEDFAEFDRQVIGELIEKQEFVGAYYEAPEDPGDEDLVLS
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