Scaffold Ga0335079

Basic Information
Taxon OID	3300032783 Open in IMG/M
Scaffold ID	Ga0335079_10000004 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032783 Open in IMG/M

Scaffold ID

Ga0335079_10000004 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	599871
Total Scaffold Genes	478 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	380 (79.50%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

599871

Total Scaffold Genes

478 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

380 (79.50%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5065	Long. (^o)	-80.2537	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5065

Long. (^o)

-80.2537

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000279	Metagenome / Metatranscriptome	1383	Y
F001520	Metagenome / Metatranscriptome	679	Y
F008958	Metagenome / Metatranscriptome	325	Y
F025870	Metagenome / Metatranscriptome	200	Y
F030501	Metagenome / Metatranscriptome	185	Y
F033872	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_10000004154	F000279	GAG	MSQNIEHGAMEEVVLPENLLPLGSVLGQGVTALDLCMVLAKIFRVQYTEVALLRLEGGLLRFIFPDHLRTTGSIPLNGKAVAAHTAMSKKAEIFNNFARVKHASIFETIKPGAGESDEPAAPSPIQKLMSVPIMDRDSNVVGVIQVSRKGLDPKFAQDFSREDLHDLELAAGLLSTAPALLNS
Ga0335079_10000004243	F025870	N/A	MTDIQIHLCERLKQLGFSRNSQMKLYGSQFDLVGDPLVISDEVVFVDAVERKSGQSCRVRIPLNIVRLATEQASHTYAA
Ga0335079_10000004367	F030501	GGAGG	MKIRPFVAIGILATMLAGPGSAWAAPQCFSPFSGVYIMFEQPVTSTLGAVHGRSWGALASCAGLSSWPLVGSAHYSKADGLVVAFRVFTVDAATCGAIDYIGTLSGSTLSGPFQLFNQRTNFGNSGTWTEIPCPAPPEEPIKPVAGVDVNGNSTK
Ga0335079_10000004368	F000036	N/A	MAYKETFWMACDSTEQLRAEYGPFHTRTEAEHEAKKLGFGYLLRYEHILGANEEIEEVRCIFVELPGAAPVGADAVASTLHTRCATCGESAAHDKGWQAEVWADIHEFEHSRHLVRLFEHSRGKGLKEIGDWRG
Ga0335079_10000004392	F033872	GAGG	MQTWVIREHGFNGNIMLNSEPDHNYYSYSLWRARTGEHLFDGAAGDLAEAMESLHAHISFLSAGQNVE
Ga0335079_10000004447	F001520	AGGAG	MNAVKFLFAAYIATWLIHGFYMGTLVSRFRRLRREIDELHKSAPTPHP
Ga0335079_100000047	F008958	AGGAGG	MKLVKFEDVHGKETFINADRLNFIADYGSGTSELNFGGEESTVYVAMEVSAVAKTLLKATTEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335079_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences