Scaffold Ga0335079_10000001

Overview

Basic Information

• Taxon OID: 3300032783
• Scaffold ID: Ga0335079_10000001
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 812264
• Total Scaffold Genes: 712
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 436 (61.24%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5065
  • Long. (^o): -80.2537

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000131	Metagenome / Metatranscriptome	1986	Y
F000136	Metagenome / Metatranscriptome	1961	Y
F000238	Metagenome / Metatranscriptome	1494	Y
F000882	Metagenome / Metatranscriptome	849	Y
F003916	Metagenome / Metatranscriptome	462	Y
F005581	Metagenome / Metatranscriptome	396	Y
F008506	Metagenome / Metatranscriptome	332	Y
F016032	Metagenome / Metatranscriptome	250	Y
F087606	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335079_10000001203	F000238	N/A	VPVRVALLTFIGTLLCFAVSLLLAIMGTVAVAVARGVNPDMRVAYKMIALPMGIGAGCVVFIVALVIEIRHYRQNKTLSAIEKMG
Ga0335079_10000001217	F016032	AGGCGG	MLARASLIMAVLLSFLALSSCSKSAPVPTSTVLPSDRVAPSPVGTSQTVLQKTFNLKDSETFPFEIPAHASQPHLHGIFESFLGKVHGVSDESSNIDFLIMNEEQESALLANRASEALFSVESSHNQAVNFDLPASMNHPVKYYLVFRSSEKSKNSKVVEANFRVDF
Ga0335079_10000001321	F000882	N/A	MPQEILSVAIWEPVPGKEAASLATLRELSSIVATKGYGRDLLYRDPESHYVFLRYWKSEESRRAALEDSDMLRCWARLGNEIQIVKVYETLGEVRMDT
Ga0335079_10000001340	F003916	GAGG	MNRLAGALIAYAVLAALSWMTISDTRVRAVSLAVLALFAMKSILRRNQVLHPDKEGEGAESGEAR
Ga0335079_10000001560	F000136	AGGA	MAKAKLKILYGEGIDEPILQEQSSAFEKAGHTVQQAAGRKAVEAALKQNHFDLVVLGPTLTRNDRHHLPYMVKKAHAETQVLVMHADGSRHPYVDVCTDTGSSIESVLNRIDTINIATKKPAAAAAGAGR
Ga0335079_100000016	F000131	AGG	MKIPATRLRLCAFVLAGLLTLPAASLLAEPLSLQALVTPSTIIEKDGHAVTFAIHGLIEFKSLAEAFAYIESQRQRWKGNPDFSASERQAMLRGLLRGSVESRVVSMADERPLETLITHTRDELTHALARVREPTPSGYADAFLAVQEKWKHSLNCWSAAPSIPARVLSNWYPIEEGIRLYGATYDSTEHFWQAVKYHPDVTIADLTELLTAMKRKDWTAWLRKLDDDPKIYVPNAYAVEFLRYNLSQERLRWFGEELERQHVQSGEHARGAQQRNKNPFRFTAFEEKVLWGDLADVFHLVYIFSPADDPMRKTLADHHFDGIYLNDRRMGFISEEFRSLMLEIWKVKYLEMPRFGEIIRSIPQEIRLSHFLNDGDSPDIPIPVYVGYLNQIRELSRQQGADAQARSANPH
Ga0335079_10000001643	F008506	AGGA	MLDHEVLTSVAEQMMNGHEVEVGEVASRVDRTGSRRFRTVRFRMEGRDYQAIEQNPEKPSRWGKLAREGHRVVQFRDVESGKYVAVAVDDRVMEYGR
Ga0335079_10000001664	F005581	AGG	MADTRAEIFAETYRVLAVEGQSLTIQGVRSGAVRRITNPNPETPLTAEDFPPGKLIALSDPLQKAAN
Ga0335079_10000001685	F087606	N/A	VKRIPWNIQLTLVGCGYFLVLIIAAALVVMRYVAYATHPADAAAYGGMWAGGDLILELFIVGMFLFVTFFLVLVIAKSETAYTIYSRALVGISLTAPLSVAMISIPAVNRGDFILSNILGYACLFRLFASPLMAFGIGMSRLFARFPRPKKLIIYALAIEGFTLLLMVGLLFTSAGPAHS