NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335082_10076900

Scaffold Ga0335082_10076900


Overview

Basic Information
Taxon OID3300032782 Open in IMG/M
Scaffold IDGa0335082_10076900 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3366
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002143Metagenome / Metatranscriptome590Y
F025584Metagenome / Metatranscriptome201Y
F037102Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0335082_100769002F002143GGCGGMAHTPDPNEAIQRFLGQWSPLTRAEALHLALQSLRDRVEPDRVLACELAWEVHAKGYWSQVRNADGTTYPTEEAYFRHVLGLASWRTAYKRLAIGRMLTRFEEPERSLLRSALAQVGLAKATVVAPAIERFEVWQTWLQCASEMSTVLLQAKVSEALDALPRGREPSPPGERFRRAVLSAMPDIEAMELVERFFHLGKRVVGSPNPIAIFLAGCRECLPEWELQAAKPPRGSCAASDSSVCPRGQSSV
Ga0335082_100769004F025584GAGGVGDPRVGEPRRWGVFWIHHEAEELRVHHRMTIPADAARAVVVTLLASGRVPPLQPTLFDFEAAAARPGLHRFWGTACRRDEVIYLILFINDRCLVLTVSG
Ga0335082_100769005F037102AGGAGGMNEPAPDLTQQVLLPAMHAKLLLRAAELVALGWTRGTAARDANGEKVRSTAPQATAWCIVGAVDRALYELWSLDVYALLGLEVEAYDTAPCPLAVQRALRWPVQRVLGRRGLAHWNDHVCPGPAAAEQMLLAAAAETMATTDRS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.