Scaffold Ga0335082_10000396

Overview

Basic Information

• Taxon OID: 3300032782
• Scaffold ID: Ga0335082_10000396
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44982
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (75.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000534	Metagenome / Metatranscriptome	1044	Y
F001318	Metagenome / Metatranscriptome	724	Y
F019104	Metagenome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335082_1000039622	F001318	GGAGG	MKRWSWILAISVLSSIAGAQATSSLNLQGDHTTGSSIGKWHDAGPDERMFFPKDMLWGWAQFDLSPPHNEIDPNLCAGNSYAYGGVNAPCNMFARYMLSGILEVRPFGRGPLRRFMLFGAPSFLFGKNVPKTLYTWSPDAIGIEHSWGAGIYLNKGFEFRITQHFLFDRLGARDKNLGPADLGNNGPWGRYMSLGVRKTFGTRRW
Ga0335082_1000039623	F000534	AGGA	MPQEISVSYQAIKSKVYRLIDALVVGEKSEAEIQESVRRWWSLIHPADRPIAQKYLLMVLGRSNSALDAMGTELLTVSGCEPAPARMAEPIPSKRMRLMERTLKENSVRTAF
Ga0335082_1000039637	F019104	AGGA	LVRNRALLTVIALMIFAVVCAAKTKKISGKIVGYDFMHHASKATSDTQNQEVVILETPNEKQKYVKVMFSSLGTTQIEPKYFDGAQALDAEVFRDHTCDEKSPIFASQVSMEQIAGTYQLTDAYKTHPPSRIKHLDCYVAIYRKKK