Scaffold Ga0335082_10000028

Overview

Basic Information

• Taxon OID: 3300032782
• Scaffold ID: Ga0335082_10000028
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 141679
• Total Scaffold Genes: 138
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (67.39%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005402	Metagenome / Metatranscriptome	402	Y
F018979	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335082_1000002861	F018979	N/A	VISSRALCLLVLCLGLVLCGCTKETGPQAPDPQTVLQTIPPADSAKYQRVQDMKNWRNPYLIVRADGVALFDVADSAEIVLKPDDLLPELAKLPASNWPYGRVVAAAENSTRGSEQAAIAIRKNKGIVGGLLQGAHIDVKWVPTT
Ga0335082_1000002874	F005402	GGA	MEITLKRVISIATLLASLIALVLLLKKPAPVGHPQAPALIAQNAQSFDQKLAEFEQATSAPGTVNTDVTSKAEVHINSDEVSAVLAQSLGNSGPAPTPTSDGAAAAPVIKDQQVSFEGDVVHGQFLTQIASKDVWITISGHLGEKDGYATFDPTEFKVGDLNVPVSLVNPALQKKLAEERDRLKLPDNVGNLKVENSQLVMQQK