Scaffold Ga0335082

Basic Information
Taxon OID	3300032782 Open in IMG/M
Scaffold ID	Ga0335082_10000016 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032782 Open in IMG/M

Scaffold ID

Ga0335082_10000016 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	175799
Total Scaffold Genes	154 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	118 (76.62%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

175799

Total Scaffold Genes

154 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

118 (76.62%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F025334	Metagenome / Metatranscriptome	202	Y
F060288	Metagenome	133	Y
F071474	Metagenome / Metatranscriptome	122	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335082_1000001617	F060288	AGAAG	LATPGSKRKRSARGGTRIPCEIPVTLASLDPHEPFSEPGQVILANLRGCAVRSPRPVPAGTVLRLQGLPAKNEVDARVINCISLGQYEHLWLLGLALDESGNIWGIETVPEDWDEDDGGDQDLLKQA
Ga0335082_1000001692	F071474	N/A	MTLKGAALLAFIGTVLITAFLTWTFILKVLNVLQGTEPPVVLFSSFIYAFGCFTLALFLFIFHKAQT
Ga0335082_1000001696	F025334	AGGA	MSLKFWALALAFVAAPSFAQTCTSKGDCQTGTVAGPYTAAQVAESTTTSSFPICNSLTCTSGLWSDISIEGIDAQQNLGTKYAFYDHAAGPNIDENLAVGPSITGQNAQVVEWVNAQFIQAYDKVTGQPIFSFVGGTTAVPLSVNGLWSATAQPECAKNSAGNVQVIYDRLDNEFVISRRVVYTAGTVKAYAWCIAASSESDLSSPTVQWYAYEYKMSSVIPCLPSSNNCTTGSFYYYFPDWPRIATWSDGFYITFDLQDPTKGYVEAGFEACQLDRVKIAQGLSSNPMTCYTYLVPAAQAPSLIHSVDVADIDSPAEPTAGEPEYFLAIVNPSNAQQGGNGQTVCTNQASPCTSNQLAMFTWGGAGLVGPTFLSVAPYTPGCYNTSTAKAEANTFCVPEPSTSTKDIGAYGTPSCGNYSTPCLDSLGDRLSNRLTYNNLSVPRKIKGEFLTASHVVMENSNNQRTGIRYYVLQVQAGKAIVAINSGTASGPTDLQDPSNTLWFLMPSAALDMNGNLGITFTASGPFCSTCQTQPHPAIYFDVLPFKATAFGPATLITQGQADEENTGRFGEYAATVMDPGDNLTFYSVGEYFNINQTGTTNCGQPASNCSTWQTRIFRGQYGNPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335082_10000016

Overview

Ecosystem & Geography

Associated Families

Sequences