Scaffold Ga0335085_10456072

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10456072
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1469
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_104560722	F001698	AGGAG	MSGVVNDIEALAEFRSHLMRFNHDLAENFATIQSHWRELGEVWRDDMYRMFGEALEEVLPGITAYLEATEGHEAHLAALIERLGGYLETGAGAGLGVGRAEVRRAQGTGPANGTGRRDRNPR
Ga0335085_104560723	F002850	GGA	VTGIHADIDALKGLHEALVRYRHAQREVAARGQDQIRATRASLEEKASQLRAQLELCQGEYAGCRERAAAADPEDLPVDCSGYARAVAQATERIEQIQRWQQRIDAEAGEFSGVAGRFAAMLADDLPRLEEHLAAMIASLEAARRVQAP
Ga0335085_104560724	F004352	GGAG	MITRPEQDGDQQLRLLADAWDQAAEHWRDGPARQFGGNQLAAVLDESRTYLEALRKLMDTLEAAERETQG