Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10108660 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10108660 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3566
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3566

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → Nocardiopsis algeriensis

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y
F006575	Metagenome / Metatranscriptome	370	Y
F012935	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_101086602	F004352	N/A	MISRPDQDGDQQLRLLDDAWGKAAEHWQDGTARQFGAVRLTPLLQESRSYLEALRTLLDLLEAAERDTDG
Ga0335085_101086603	F002850	GGA	LTAIHADIDALKGLHGALVRYRHAQRDVTARGEDQLTATRASLEARAARCRTQLELNQAELGACRDRAARVAADGAADRTVDCSGYARAVEQTAERLESIRRWQERVDAEASEFGGIASRFADLLENELSRVEEHLVAIIASLEAARRVQAPAS
Ga0335085_101086604	F001698	AGGAG	MAGVINDIEALAEFRTHLMRFNHDLAENFATVQAHWRELGEVWRDDMYRLFGEALEEVTPGIATYLSATEGHEAHLAALIERLGGYLETGTGAGLGVGRPPEARRGQGNGTGRR
Ga0335085_101086605	F006575	GGAG	MTTEPGTGTSPYLSLRQAVRPAILAHRLLAGDQERAGKLATECEDLLYLTGELLKAAGRASILAGTSPPRMPEEGSGDRQAQLLEAYADAGLLWAKVVGSSLALAGVLIERGDWEDVRAMASFLAGAGEETAAAELRIQLGRAAWERHREQLRAVSNDMPPAAIEPAINALRAVLREVPEDYPDRNREVNRFLPPLASAIHAIMEEQQADIPYHSRVEHIATGGVATYPDIVETSLDELAAEFDGICRRPDGTVT
Ga0335085_101086606	F012935	N/A	QPERFFLLAGMHRWHELLAEGDYGRPSEISARLVRLADKGPDAGIHVVAWTDGYATAERALRRAGLGFFGLRAVLRVLSPAESDALLGVSAAASLDDDRALYRDTEWPAEQVEKFKPYSTASLYAFAREGFLITSRKWSPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10108660

Overview

Ecosystem & Geography

Associated Families

Sequences