Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10027437 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10027437 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7988
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7988

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y
F006575	Metagenome / Metatranscriptome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_100274374	F004352	N/A	MISRPDQDGDQQLRLLDDAWGKAAEYWRDGTARQFGAAQLTPLLQESRSYLEALRKLMETLEAAERDTEG
Ga0335085_100274375	F002850	N/A	LTGIHADIDALKGLHGALVKYRHTQRDVTARGEDQIRVTRASLEAKASRCRTQLELSQAELGACQDRAARAAADDTTRGPVDCSGYARAVEQYGERLEAIRRWQQRIDAEASEFQGIAGRFADLLENELPRMEEHLVAIIASLEAARRVQAPASSS
Ga0335085_100274376	F001698	AGGAG	MAGVINDIEALAEFRAHLMRFNHDLAENFATMQAHWRELGEVWRDDMYRLFGEALEEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGVGRPPEAGRGQGNGTGRR
Ga0335085_100274377	F006575	GGAG	MTTESATATSPYLSLRQAVRPAILAHRLLAGDQERAGKLATECEDLLYLTGELLKAAGRARILADASPPRMPEEGGGDRQAQLLEAYADAGLLWAKVVGSSLALAGALIERGEWEDVRALASFLAGAGEQSAAAELRIQLGREAWETHSEPLRAVSNDMPSAAIEPAIAALRAMLREVPEEYPDRNREVNRFLPPLASAILAIMKEQDADIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFEGICRRPSGKTTQGALCKPAASAGLLGLRERPVQTRRHQPQRFLHNATN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10027437

Overview

Ecosystem & Geography

Associated Families

Sequences