Scaffold Ga0335085_10006727

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10006727
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18052
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006695	Metagenome / Metatranscriptome	366	Y
F034586	Metagenome / Metatranscriptome	174	Y
F056801	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000672712	F006695	AGGA	MPRKGPPGTLLALALALLGCGGMKDAGSVADKFVDKYYVESDQDSALPLTTGIATLRLRDELKLTREARQGNPGMPLRPVRVYYKRTALTGSDGAREADYELDIRPQGGGDLQRGAHLVLERQQDGTWRVSRFSESQPSEPAVH
Ga0335085_1000672720	F056801	GGAG	MIADPAWKSALLHKGQDVADMLEAVLSGKEVDLSSLPVPFGPGQDPELRLRNFLDQIDRAIEAFDTDRFGRCQFCGVDLDRRALQQQPWLASCPAHAGRWIS
Ga0335085_1000672722	F034586	GAGG	MGPRYEQYRWWLLDGDLEIVSDGKVGGSSLPAALADLNREIDRLGEAGKRPTRRPYSLIVYRGSDLVAWRPSTLGIC