Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10005287 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10005287 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20827
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (92.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

20827

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (92.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y
F041547	Metagenome	159	Y
F041548	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000528717	F017431	AGAAGG	MSKVKTKSEQEFDRTEILRYLNECGLQPVTPKSILIYLDDCLRPVSLPAVEFHLRYMRDRGWVELGIEKKMGAPEVIRWTRITANGVDEYDRRCVALGEAR
Ga0335085_1000528718	F041547	GAG	MFSANEIQALLLGSGGFLGTCMAGVGAYRLFSAATRGVLRVPASLEKGADSLERVVLAVETQNAVSDQVMELKGLLMATREEILKMGTEREQIGRELRLMSRKIEAFSCYALDELK
Ga0335085_1000528719	F041548	AGGA	MDSNSIQVQALITFIMPLLIQLAKRSQSAGFAWIDQNKPKICMLTSGVTAVLTSMGIEFAHAPHSLTVSWPDTATLVRGLATFAVSAVLQFAAQHALYDGFWRHVVPTVSHQPSVVSHQ
Ga0335085_100052874	F022798	GGA	MSYTTITQVSGMFPTFTRNGTRGPTDALIQTFIDDVAGEIDAILQRRFQEAYAGLGFIAWQTAFSTDQLNLLEKINRYGACAQLAEVFETSGIAAAARVAKGFEDEFRELCNKLNARDVEGKPLVQGGDYDFLFDSSAKVETPRPQLGGVAGGDQHPGETSSEGSTNTFKKWDRREF
Ga0335085_100052875	F019267	GGAGG	MAASATFTTLYSFREDRRRLYRRVRVDVTGLASGANTIAHGLTKRESPAQGAAPIEEQVLLTSNVAVHRTQAADATNLYYTVDSGSGTTISVYVTV
Ga0335085_100052878	F023263	AGGAGG	MLGNQGLAAAKFDTNIRALRGTVMSLPVSNLSTESDFYVGLPSGFNVVPTGVVAQDVVEPGYPLTSEMWLDPNTSNPINGSTPPSPFVSQGRAWGLIINAPEAEVIAADTTIQAEDDVVIADAYGRVTSIRNVSAGNTVNVVGKAKYPATAVNQRIRIQVSLRQTKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10005287

Overview

Ecosystem & Geography

Associated Families

Sequences