Scaffold Ga0335085_10003993

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10003993
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24887
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y
F040975	Metagenome	160	Y
F041547	Metagenome	159	Y
F041548	Metagenome	159	Y
F048047	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000399316	F023263	AGGAG	MLGNQGLTAAKFDTNIRVLRGTVMSLPVTNPSTESDFYVGLPSGFNTVPTGVLLQDVVEPGYPLTSEMWLDPTTNNPINGSAPPAPFVSQGRAWGLIVNAPEAEVIAADTTIQAEDDVVIADAYGRVTSIRNVTTGNTAYVVGKAKYAPTAVNQRIRIQVNLRQTKV
Ga0335085_1000399319	F019267	GGAGG	MAASATYTTLYTFRLDRRQLVRRIRVDVTGLANGANTIPHGIVAPNNQAAGQTPKDELVLLTSNVAVHRTQAADAANLYYTVDSGSGTTISVYVTV
Ga0335085_1000399320	F022798	GAG	MSYTTVTQVCGMFPTFTRNGPKGPSDTLIQNYIDDVAGEIDAILQRRFQEAFASQGFSAWQGGFSPDQLNLLEKINRYGACAQLAEVFETSGITAAARVAKSLEDEYHGLCNRLNARDANGKPLAQGGDYDYLFDPLAKVETPRAQLGGVAGGGQSPSESSGEDSTTIFKKWDRREF
Ga0335085_1000399323	F048047	GAGG	MPDNGIASAEDFRRVVERSNVEWVVLPVSGLRVRLCRPPVFAALAMGRAGTLLQARVTDVKPEEIKMGDVEAFTSWLTETLTRLFVEPRFASVPEIGQIGLADILIDDLKYIFRWLRGEVFSSGPRCQVSGAWEHPDTQHLTPDTCSEDLGRFPGG
Ga0335085_1000399326	F040975	N/A	MVIGLIRQAGDKGRRARNMIFGNQTWQSGLTAPQKQPLYILQIPQFGIVLATFTQSQIQSLTQSGYGAMTWGIGGWGT
Ga0335085_100039934	F041548	GGA	MNPRGDAVDDHSLQVQALVTFVMPLLIQLAKRSQNSVFAWIDQNKPRICMLTSGVAALATSMGVEIARAPHSVTVSWPDGATMLRGLVTLVVSVVVQFAAQHALYDGLWRHVVPTGRGLRDTGFVSKES
Ga0335085_100039935	F041547	GAGG	MISANEVQALLLGSGGFLGTCMAGVGAYRLFSAATRGVMRVPSSLEKGADSLERVVQAVETQNMVSDQVMELKGLLMATREEILKLGTEREQIGRELRLMSRKIEAFSCYAQED
Ga0335085_100039936	F017431	AGAAGG	MAKEKSKSEQEFDRTEILRYLNECGLQPVTPKSILIYLDDSLRPVSLPGVEFHLRYMRDRGWVELGIEKKVGLPEVIRWTRITANGVDEYDRRCVALGEAR