Scaffold Ga0335085_10003897

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10003897
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25249
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (91.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001275	Metagenome / Metatranscriptome	733	Y
F005540	Metagenome / Metatranscriptome	397	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000389721	F005540	AGGAG	VDFVTKFEKALRKRYQHLKTEIAKIEHLIDAFEKGAKRGAKSRGRHGISAAGRKRISMAQKARWARAKN
Ga0335085_1000389731	F001275	GAGG	MEEKELRRAELIRLCQAVSPSHEPCEYLATVHCSRCERWFCDSHIEDEEWHSCALPPGEEGGES
Ga0335085_1000389736	F005540	AGGAG	VDFVTKFEKALRKRYQHLKTEIAKIEHLIDAFEKGAKRGAKPTGRGKISAAGRKRISMAQKARWAKAKKG
Ga0335085_100038977	F001275	GAGG	MKEKEIGRRELIRLCQAVSPSHEACEYLATVHCRRCDRWFCDSHIEDEEWHSCALPPGEEGGEA