Scaffold Ga0335085_10002586

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10002586
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33419
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (78.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005715	Metagenome	392	Y
F012367	Metagenome / Metatranscriptome	281	N
F015395	Metagenome / Metatranscriptome	255	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000258618	F015395	AGG	MSFACKSDGRCDHALKECSTVLGEYCLVCHHSSTLPTPTRRSTPLGPRKDRTSLSALLREIRARRGRR
Ga0335085_1000258631	F012367	GGAG	MMTRRELERWLLREGATRIKRADGHKHFDLRGHHVVVLGHGPQTLSATSLSLVVKQLEQAGYSREQLRREWDARS
Ga0335085_1000258635	F005715	N/A	VTHGSVVTDLTGVTIQTGELVVLRRAPAGSHVVAGRLYVE