Scaffold Ga0335085_10002411

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10002411
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35061
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (71.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015986	Metagenome / Metatranscriptome	250	Y
F020050	Metagenome / Metatranscriptome	226	Y
F049545	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000241118	F020050	AGGGGG	MQQRRPVSPLELTPQQVEALRQLAQFGSTDAARSLGRLLGTFVDMAPPRAQVAPKGGVQQVLQPDGAAFSVHFEVDGGARLRWMMHVSQEGAALMGGLLLGGPQGEMRKPTLYASALAEMSNIVVSSYVGGMAAAVGLTLVPSIPHVGTGSLSDTLEAAFGDLESSLLLVTDLRLPGVRNAGRIVAAPVDESLTRLLSMLGVV
Ga0335085_1000241133	F015986	AGGAGG	MQRRRPALARILSAFAGLAFGLLGAEMTFGQLRPEEPRSDAILYSIEVRNGAGDLLASPMLVGEEGRPVHLSLSQDAGPRSEPLAMSLDLTPQPDGDNLCLGYRLALDDGFAHSGRMTLAFGEMSSVELGGGSLRLSMVVARAHSREFERILQQRRRPAA
Ga0335085_100024116	F049545	N/A	MKAAFQRKLEEFLAAAGLSRVHPEAVEPTARAVVEALAGLPHYDQVWAGDLETSVQVIVVASGERVPGVEFARRAQMLRERALSLGSRVKGEVQVLQLALYSRSVPEEERQFVIEKGRVAGRWPLARGRVATWVVSLSEPALHAGLFRGWPQALSADQLRALLA