Scaffold Ga0335085_10002183

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10002183
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37504
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010061	Metagenome / Metatranscriptome	309	Y
F036819	Metagenome / Metatranscriptome	169	Y
F052631	Metagenome	142	Y
F087682	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_100021832	F036819	N/A	MQTLLVEAFGPLVVAFALFVAVFGVRRLIHQFRNRLTPEQHQAERDSFRNRLVHPRAGQVEQAIGALLPQRLITLYEDHQTILTEQLEIRRPEPDPRNLAEPKNPAEWIEAFLPLDLESQRLAINLTAQGWGKGFCFATDGSGNFYWIPAADVRQADAPVFFAHTDPVANEQVAASLDELLTWPRTLHSAEVEADA
Ga0335085_1000218321	F010061	AGGAG	MLFAVVRRGKNSGTRLFPHRYAEDGRFHVSLTRQGPHIPIADDRDIPDYLANGYSLGMSNRAASYNPTLIKPASILGWK
Ga0335085_1000218330	F052631	AGGAG	MPRKIKRVSHLTRQRALAVLARMRSGGESLSQAARNERTTPLTVRKIVGKQLKRAPSGHYSASRGDTLRRDINVLGYEGYEPVVTRSSKQAQLASAHLVAASRYLRTGDTEWLKPFIGKRVGGVELLTDPDRLQILADADLVKLDGLYRTNRGGTEK
Ga0335085_1000218331	F087682	GAG	MTQLHNPARAARRMAEAIEQVDVPLCLYCGNTDPRLVRPRRIQNHHLFGEDRDEPTVPACLNCHAGAHDALIDAEVPMTCEKETKKFARAIFRALAVHFELLAKACWRFAKRMEEK