NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10001902

Scaffold Ga0335085_10001902


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10001902 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41259
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F001528Metagenome / Metatranscriptome677Y
F057062Metagenome / Metatranscriptome136Y
F064903Metagenome / Metatranscriptome128N
F090320Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000190233F090320GGAGMIDPKTNHNRENAGSWTLSKFGGLDQLDWLMILVSVLIGTLAKQHHFLELPAGFLEWVFPFLLMMVGYRVRGKITEIIESRRATTRSTQDE
Ga0335085_1000190234F064903GAGGMRSLFPLSYDRADVLMSAGCSTFVSAALILVIPRVGVLLLEILFGLFFIGCALMARARRRSVQYRDRPAKSSDAKTKWFDRYDVLMILAVIVVQSATAGLLRKAGWSGGTVSILPLMMFAAGILLKPRVVEFVGRRRKTQLADGDRRNTAAQPENLDRSDRLLGPE
Ga0335085_1000190235F001528AGGAGMSEKNQVVVVLIAALSLGAFVDRVTVVKIVAGVALLWTLQNQPTIFECIRKVFSPRRGRFSVREYGGGAKTFASLRK
Ga0335085_1000190238F001473GGAGMETRYQTVGEMYERLQLMIRQRGDTGFRLAVRDAVFEPRNPFEPASKRRPKPALAIIISVFLALAFVFSYFSFHHGA
Ga0335085_1000190239F057062N/AMAIPRREEIHSLTSDGAWLPRSTELAGEEIPPETNLHETLFSEMATSLCYWSTVVLLAVACAGLLYWRLRHSGSAVAPATDPFGIATPSWMMLSLPPIGVAASLGQAAWSAVRGRRVWNMLMTAAALIAVIVCEVRL
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