Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10001865 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10001865 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42006
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (75.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

42006

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

36 (75.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000426	Metagenome / Metatranscriptome	1154	Y
F000534	Metagenome / Metatranscriptome	1044	Y
F001318	Metagenome / Metatranscriptome	724	Y
F019104	Metagenome	231	Y
F090792	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000186523	F001318	GGAGG	MKSWIWILAVPVLGLLAGAQTTSSGNAPGINSGNTSRGVWSEGVWHEARPDDRMFFPKDMIYAWAQFDLSPPHNEIDPNQCAGNSYVDGGANAPCNMFARYMLSGNLEVRPFGRGPLRRFMVWGAPSFLFGKNVPKTLYTWSWDAIGIEHSWGAAIYISKGFEFRVTQHFLFDRLGSRDRNLGVADLGTNGPWGRYMSLGVRKTFGVRRW
Ga0335085_1000186524	F000534	AGG	MPQEISVSYQAIKSKVYRLIDSLVVGEKSEAEVQESVRRWWSLIHPADRPIAQKYLLMVLGRSNSALDAMSTELLAVSGCEPAPPRMPEALLPTKRMRLMERTLKENSVRTAI
Ga0335085_1000186540	F000426	AGGGGG	MKDIHEVLRQKQAKYAQLGKQIEMLQQAAEKLREVAPLLAESDEEDNVVLAEVDDASSADALAAKAGASSGGSTASKPSRPAAPRWP
Ga0335085_1000186548	F090792	AGG	MERRFTDDEKGLLEQAFQLRESQTEEQRATMRAEFEGNWPALVAYIKQSEARGEKMRGDVLFELGEGQGGPSIERIVWYMLDRAVLMSTKSGP
Ga0335085_100018656	F019104	AGGA	LLRHKQSLLTVVTLASFTLVAVAKNTKLTGKIVGYDVMHHTSKSASAVQNQEVVILETSNPKQKYLKVMFSSFGTTQIEEKYFDGSQPLTTDAFRDHSCDEKTPTFVSQVTLQEIAQTYLLTDAFKTQRPGRIKNLKCYVAIYKKKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10001865

Overview

Ecosystem & Geography

Associated Families

Sequences