Scaffold Ga0335085_10001827

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10001827
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42579
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (71.11%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010184	Metagenome / Metatranscriptome	307	Y
F010267	Metagenome / Metatranscriptome	306	Y
F011251	Metagenome / Metatranscriptome	293	Y
F014050	Metagenome / Metatranscriptome	266	Y
F014439	Metagenome / Metatranscriptome	263	Y
F016589	Metagenome / Metatranscriptome	246	Y
F019520	Metagenome / Metatranscriptome	229	Y
F032418	Metagenome	180	Y
F052829	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000182713	F014050	AGGA	MVRWEVWLRGILAAAIAGGANGVITGFAAVGIDPQHFNLQAGLRSTLAIAAVSALMSGIIGVAAYLKQSPLPKEM
Ga0335085_1000182717	F016589	N/A	MIQISRETHEAPMEAARALALAGGRNRFGEPNYRAVWGWSRLDWIGGKWEDRDASGSLIREVVELRREPKYVPHNRWHIERWTPPESYGSPGEWHAQTVEIENGRNIPALGPYPSRGDYEHCFTLEGPSGEFVQLTPTVARHIARAIEISRGIPRAERREALDERSRREDRAYDSFAEAALS
Ga0335085_1000182718	F014439	AGGAG	MSVTLTLTDVDPGGTQVYAFGTVQLSGTYPSGGDTVDWTQLIKQTAVRGQIVDSSMTDPSYGPLQASFTVQGGTPNQYQMQQGTAATNWKMRGYTTGSSGAEFTGGSAYPSSATSDVITFSAQFRKET
Ga0335085_1000182728	F010184	GGA	MWQKMITWLARRLRSRYVRLLEEEVSRLRAENRALVNSLLGTAGFPPISLEDDARARPVALPPVRKRTWTQIARDRELAASRVTAEK
Ga0335085_1000182732	F010267	GGAGG	MATTTWQSVGQYVQLGGAGGFLAGAVLSFHHYAIGICFIVGAAAFYVGKKLRSA
Ga0335085_1000182737	F032418	GGAGG	MLATFAFDVCHDVYRAAREVLDTKVPTLNPESFGKYQWHPDRRPRLAEYVCDFARAGEKALAGDARDGTGRSRQAGLCSTALRPDSSPRVLKASRTAMFRLYYLGGADYHAARRHLGISELTWADWAEEIRRLVGRELARAGVFPLSKYFREMSEKAS
Ga0335085_1000182740	F052829	N/A	LQSFELTRLNHAANLRQEIAALIDQWIQEMSEAMLARWMLDHHKSLQPSPVSSSEALRTLTDPSIAFFPETHPLASEIDSAPPRFSASRPAMKGSVTRKPQKQRQTAVG
Ga0335085_100018277	F011251	N/A	MNPYWIVAGISACVQLLFFLRWLHRRTRDDEIGRAFVRDMALNHLPHVYHALRQIAGELHIDLEEPPPVQFLDLNGHERKR
Ga0335085_100018279	F019520	N/A	MRIREYTSQDFDALRRMYLAQGFGYPLPDLESPLFLAKLVLEEDAEGAQIKSEDGIGREETNPSSLQEMPAGAEPGCVKMAILLRLTAETYLLHDPQSGTPGRRWERFLALHEAARRIAIARGLDDVQAFLPPRVARAFGRRLARLGWMQDPWPCFSRRLP