Scaffold Ga0335085_10001575

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10001575
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47115
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (92.45%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F001643	Metagenome / Metatranscriptome	659	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006399	Metagenome / Metatranscriptome	374	Y
F017708	Metagenome	239	Y
F017965	Metagenome / Metatranscriptome	237	Y
F020070	Metagenome	226	Y
F029198	Metagenome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000157510	F017965	GGA	MSEKIGHRDALYLFACHLEWLTKRNLAAYEELLAALGDHDRDIRSLAGALLHRTSPRPVRTEATIETR
Ga0335085_1000157512	F029198	GAGG	MDSKLSSRAVRVGGEVVVLRCWACGTAHCVNEELCVPGELSHMVCSNRNCGMSMFLVNELAVDDKTRKQMTKGELGAHFPVLSRLWK
Ga0335085_1000157514	F004823	AGGAG	MYATKAVNGVPAIQRNGQSVLGVCDQNWEFANWLCALLNELGQKSDLLLNEQDWEWRKAIDRPFRRTAQHA
Ga0335085_1000157524	F020070	AGGAG	MRFRQCCRASSIVAFGCVLVVIGAYCACPSVFAQTSDSRSAAEPTKSWTATTDLKSDDLTPQHIPVRIIESHSQNGNRTLDKRSVEIRGTDGRVEPYQDIEKETLQVDATMVRATTRTFGKDANGRKALVQVTEEEKHTLPGEDSNVVRVTYNPDVNGRLQAVQREVVETKKIGRDMEETNTTVMLPNVNGGLAPVFKTQEIRKRAANDTVETEKTTWLSDINGNWQVNEVSHATTRQKGTNRTTEERVSRLDFEGKLGEVSRVVSQESESTSGEKRNVVEAYSIDVPGTTRDGRLHVVERKTSTESSSSTGERAREQKVEQTNPGDPHSGLRVTVLVDGRMVPGPSGEQSTVTIRARDSNGKLGIVSVDTTKSDQIPTIRIQQAPAERP
Ga0335085_1000157525	F001643	AGGAG	MLEELMNIPTDTLIDMLYIILAGDFAITANDAAEIEQIQRELQRRGGAHRWSFQTVN
Ga0335085_100015755	F017708	AGGAG	MAKVIEFYVPKNFRKSFKTVAQAQLGKLIEFCPQTKRPA
Ga0335085_100015758	F001596	AGGAG	MSWFHSSIAGFDARNHASSVEIVACFQDQRNILDTLAFLITGDHATANQAVVQACETTLQGNGPFRDWLLEWAKAATIASAISHAAEAIRICEADYKDQRCPHAEHLSPGDDEERAASLDLILRSDAQTLIAELDPLCRSVLVLRVAIRSSIQDCALRLNVPRAAVLAANCHVLTWLHERHVKPVEEKRDASHAL
Ga0335085_100015759	F006399	AGG	MATLALNSEVQALVAEYSIFWQLWPQFEQIHGERRLVGFEVELIGFHTSDPNHLDPGCPACRQVRSVLLAIADAMPRETGFRRNYLTYNIDSHSNSILCLPALGNRSAVSVSIYVFWNSSNGRSPETDLVSEIKGFLNGWGIHQR