Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10001497 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10001497 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	48885
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	32 (69.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

48885

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

32 (69.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F007662	Metagenome / Metatranscriptome	347	Y
F010494	Metagenome / Metatranscriptome	303	Y
F026687	Metagenome / Metatranscriptome	197	N
F043561	Metagenome / Metatranscriptome	156	Y
F071355	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000149710	F010494	GGAGG	MRIELLALYGGPDQVMTVTSGLASVLGLLLLFWNKVVGIFFKVVRKFSRSGTPAAVDVPKETPKGTP
Ga0335085_1000149712	F026687	AGG	MSDRILCSCITCPKCGTWVVVEREMTRETNKEKLSATCPDPECGKQFSFAPGETKVFELPVSLFERRHFYRSELS
Ga0335085_1000149720	F007662	N/A	MPQSKKTGETRRAPRVKLSGTVLALVRLESGREIQARLHQLSFTGGLLHLDSPLDEGIKAEVMFHVGGSTIRSKAAVLFPMWATQGCLQPFEFADLSEEDRTKLKADLEKFLSSPAAALHPDEQASEAVAGSGE
Ga0335085_1000149730	F071355	AGGA	MTNSLLQRLIEMCCRHEFTWPHAGVHGTAYQACLLCGAVYSYDCSTMRRTGRLVTLPDPRYPPLTESQPASE
Ga0335085_1000149735	F000175	N/A	VDEGRKRVLLIAASILAARKLAQYDSGARVPATVAAIADGVRWAERIMEEIDRRHPEKPAQQPRAS
Ga0335085_1000149738	F043561	GGAG	MTTTVCRGLTTQSWKDLYRAALGESDLNRLPGRIDAAEAAIVIRARELFYEGDEAEDRESLDDAMCILHALRSSLNSRPSAIQSTSDLKADAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10001497

Overview

Ecosystem & Geography

Associated Families

Sequences