Scaffold Ga0335085_10001236

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10001236
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57407
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (79.63%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000978	Metagenome / Metatranscriptome	815	Y
F013561	Metagenome / Metatranscriptome	270	Y
F014062	Metagenome / Metatranscriptome	266	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000123625	F013561	GGAG	MSDMQADLLKSFRAFIQAAEDGAVIPPVDEHDLKALHELCVERAKRYCGKDGVISIESTARACSPTANLPAVWLRHTQVRSLFRNGVLAEWQHGTTLDDAVFRLAARIPLTGTHMDAQTFLRELRAATVA
Ga0335085_1000123633	F000978	AGGA	LQPTCCLRCRREIEAGDKSVAVYMFAQTVGVKPRQKSTAQRVCFCPQCAVSLAMGLPPEGALNMVAWEMIRDLVSSEPSLNQAAWESLRGIVGLLPAGKEESSGRYRRVG
Ga0335085_100012369	F014062	GGAG	MAANRQQGTYVGTSLLGFTALVGGLYNGGAWLLASAVGAALLLYSGFGFYRAKGVA