NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000605

Scaffold Ga0335085_10000605


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000605 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96823
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (78.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000532Metagenome / Metatranscriptome1046Y
F017684Metagenome / Metatranscriptome239Y
F039730Metagenome / Metatranscriptome163Y
F075147Metagenome / Metatranscriptome119Y
F099611Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_100006052F000532GAGVKVASLVTLIRKRLGIEAVLTPGKTGQFEVMADGEKIAERGGNWFTRSFGAGYPDLESVIEQLAEKHRGSGAA
Ga0335085_1000060536F017684GAGMYWGAGPALGLLTFLGYAAFAAGAMLVWRKREDFSMWAHDEFGAFRRSLSRYTVVGPFYGVREESRLKAVPSQVFSSMSRFPRRHINPAFLLLFLGVALFLLDFFI
Ga0335085_1000060566F099611GAGMICEGDSRGNSFHTNGHTPLGGRESRAENESMRALAGILVACALLFGVYEYYLRSMPVTDKGTAATQAISLTGVRTDLMQIAQAERGYIALNGNCVSIDELASSHSLTLSRSERDGYSYSVECSGGDFSITARHAPAPADSPIRYPTLAIDQNMQVHEVN
Ga0335085_100006057F039730AGGMRAETIPRSASHHAKPLVIRGGLARTFGGLISFLALLFLLLGLYILREAFAHPLDAQAIGVLAAATSITLAAILFYFLLKPKHKHGPGSRTTYFRRAG
Ga0335085_100006058F075147GGAGGMMMRFGELWHCTNPACHCEILVQSDSVSDGSNPRCVCGAPMKKKYVPPHLTYLEFLRIEEPLSAPGASGKG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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