Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10000533 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10000533 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	104701
Total Scaffold Genes	88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	68 (77.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

104701

Total Scaffold Genes

88 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

68 (77.27%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001069	Metagenome / Metatranscriptome	787	Y
F008313	Metagenome / Metatranscriptome	335	Y
F015365	Metagenome / Metatranscriptome	255	Y
F059235	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000053320	F015365	N/A	MRARSLLFAAGLIPAFVATALTQNSAQPPAPPRSDAEKSALLDRVIANEKQSDEAMYSYERIERVESFKKPGDPRTEEIKVSRVIPAGTGLDHIPIGPDGKPKDPGAYHEELVKLERTLSWAADDGHAQREAYEKVAKRQKEREELVDATRTAFLYTLVSTETRAGLILFKYSMAPNPAFKPTSRATSIFEKVHGFVWIDPEAGQIARVEGEVLEDISIGLFLAKIYKGSHFMQERYEVQPGVWMPTYSQYDFDGRRFFSTISVHERTFYSQYHRIGPPKEALAIIRAELSKPDASVSDP
Ga0335085_1000053329	F001069	GGAG	MQYLPGFTVQCINPLCEARGHWLRADTTGPIIDDGRCPCCGDFLRNVPPPLSPRFRMRPRPLTARPPLRPRPR
Ga0335085_1000053368	F008313	AGG	MTAVLILVFSLFALAQFAISQWRMIWLTTANQPLSDALRTATGIEDGSIGPNDFGKLLGLCDELSPTIRKATPWLREVRGYYSTVAKLQKAFQSIQPTMAAWATNEMRICSRYVAVVLDQNLSLELDQRAAVRSV
Ga0335085_1000053375	F059235	N/A	MSKGKAALLIFLSGTAAVVSALELHGWHVYLALVLVGVGLTIGFLRWSRNSERSKSDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10000533

Overview

Ecosystem & Geography

Associated Families

Sequences