NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000437

Scaffold Ga0335085_10000437


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000437 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119610
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (74.77%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001869Metagenome / Metatranscriptome624Y
F013245Metagenome / Metatranscriptome273Y
F067062Metagenome126Y
F080424Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000043714F013245GGAGGMSVKWRCVAMLPVVAIFAISALAQDGKNEIGGQLGRTFISDQGIQNATYFDPIIHSGKGLTFGGEYARRLWVAPVYSVSLEGLVVYNTDLDLNAGEYGHSVVPSDLKKLFITPAARVNLFPTTAVSPWVSFGGGFGHISQNDQLIYGGTNPGKSTTSGVIEAGVGLDVKVWRKLSIRAGARDFWAGQPDFPLAPTGKTRQHNYFVSGGAFWRF
Ga0335085_1000043722F067062GAGMLIFEQLVARGLMVFDPNRKVLTFNIPVLAKFPAIRQQRIEEFRWLIGDWAFENHVRATLTTTAYTDTYYYTYELADNGSRYTVSGHGAKARPYLTFDPFSNRWMMTFTEGLFGVLQSDGWHGDKIVFSGPLTMLGVDCELRQTITRQSADEFHILNEEKLPDGTWRETDEFLCRRKQPA
Ga0335085_1000043750F001869GGAMRPWVRWPAWLCLSLMLWTVAAESTHNHPNQTDSASCLICVAAHSAAPALSSGHVAPFFAAVGILQEQAVIAYARLDYSEAGIRGPPAAL
Ga0335085_1000043786F080424AGGAGMASSNKREGGSGINFGADFSELRERPILKGSDLDVPTAMEVAPPSEGEPQTDVIESREAVAAEKAADVENDPLTRLLTAAERERGLPYTFRIPISMDREFRTLAKEFDLDLSDIARSGLEMALVKLRQMSKARKRRLQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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