Scaffold Ga0335085_10000350

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000350
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 134351
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (80.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001147	Metagenome / Metatranscriptome	765	Y
F044416	Metagenome / Metatranscriptome	154	Y
F080266	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_10000350114	F044416	GGAG	MLTPSTALANFIRVQAMSPLLVLWDLTKRVSNIVPETVDRFNFRRFWGEGILSTDAYFVMDSYENVRLRNNFRNAEPSGGPEDRGAFLGTELIRGSFCPQAAAMLTALFLRYSGKVLRIANDTEPGLKRDAILICYGTPDMNFKTFDVEAWSGSSLCQFLFTESGQRAFRLAGQLHSMESRGDAVYDKAIVLRLTNRHESNHPHVVCAGLTEWGSLAAVHYLTKNWKDLRKRFDSFGQRRDFCVLMEVQCGQFEKTRELTSVVWWDTGTAPKPALVSSHARAHV
Ga0335085_1000035078	F080266	AGGAG	MENDSQHDSKQPAQGKDAWSKQLAGGTLTFTTEGVGNPVAAYALEAKFERGTSSYSMTRQSTEALSRAEVESRFADFISEIRHGQ
Ga0335085_1000035082	F001147	AGGAGG	MAQTIWIHRLADTQKTQAEGMEYICEHLFQGLTQAGKLTKTKGWNPVPNASSKDGSTYRALFCDSCGKNYNNSNVRMAKEPVLA