Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10000344 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10000344 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	136390
Total Scaffold Genes	143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	120 (83.92%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

136390

Total Scaffold Genes

143 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

120 (83.92%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007854	Metagenome / Metatranscriptome	343	Y
F013999	Metagenome / Metatranscriptome	266	Y
F016649	Metagenome / Metatranscriptome	245	Y
F017625	Metagenome / Metatranscriptome	239	Y
F018762	Metagenome	233	Y
F055579	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000034436	F055579	GGAGG	MSSDGTNYTHYVVLNDTILGEARIIEKCNECISLAFVKLGTGGAKAFNDYAFVENRALVPKILN
Ga0335085_1000034442	F007854	GGAG	MNTLIANQYGRVQGEVGGNGLTLAVAAETPRRESVQLQTRIDSVEQLLHLLAIMRAVERRIEQFQLREAKPSQPGETESAFDETISSEGDLFGSNGNSKNKIYGRFAQFLVYEQVDQGRLRAFFAVRDEAKRVARFDLHPGEVQAFQALAKRALFTCHQVDLLLRDDLSLSVGLNVSGHGLKFEVQSPMWHSQFAINKANDLATLTVFTRRAVNQEKTVPVRFGDDATHVILRKRNDAQVIAEFEHEESTEKITLSTLQLLELEVLAQHALDRAFEPVSVPQPTHLPSAESATAAQIA
Ga0335085_1000034453	F018762	AGGA	MRQLRRKLFPATIVLATVLILPVAAHAIFGTMPVIDWTAVVRIGEQISVSRDTLNTLGLYVQQYNRINAGVQEGVALARGRQLRGILNDTVSSAFPQFQQLQSDFRNVLIDPSTIRHDIEDSYGVVAGDFPLERKKRFDAADTTATIGLFDASRMELVSEQEEQDANDIESRAAVASPSGAAKLSAAANGALLRSQAYNQRLLARLMRLQALAVASQNSVEKEQEQSRQDQVIAVSNTVGSMQLSYGLGDRAGR
Ga0335085_1000034456	F013999	AGGAGG	MFRIVIKARRLAPRTFAALTSLMVLVMPAFAQVGGDRVTGFLSNSLNYAQGLGIFGAGFLVMWAVANIARERPSTKQWAGAGGALLLSSVLQLLRTFAG
Ga0335085_1000034459	F017625	N/A	MSRNKRRDIDENKFFGFAKSYLSEAFPNPQRIGCPPEGELIRMAEHPSEQDEEISDHLTGCSPCFNRYMQILAKLRTEPI
Ga0335085_1000034461	F016649	AGGAG	MHNKRLSFSLLVLVIALLVGCNSRPNVSGVWKGTMNASEQSGKNKWQGPAELTLNQNGDAITGTLVFTHPQGGRVQVPISSGVVSKDAVTFSGQNQFPTGSLELTFHGTVSGTSLTGNADMTSRSILIGPVANTASINLVKQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10000344

Overview

Ecosystem & Geography

Associated Families

Sequences