Scaffold Ga0335085_10000313

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000313
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 144944
• Total Scaffold Genes: 150
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 134 (89.33%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001558	Metagenome / Metatranscriptome	671	Y
F001596	Metagenome / Metatranscriptome	666	Y
F001643	Metagenome / Metatranscriptome	659	Y
F005435	Metagenome / Metatranscriptome	401	Y
F006672	Metagenome / Metatranscriptome	367	Y
F018460	Metagenome / Metatranscriptome	235	Y
F020070	Metagenome	226	Y
F029198	Metagenome	189	Y
F031847	Metagenome / Metatranscriptome	181	Y
F075621	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_10000313104	F001558	GGA	MEKGPIMLRIETEELDGALICRLEGRFIGEGAEQVRALVMRCDSKLQLVVDLTEILFIDATGEEVLSFVKKLDAQFLAETSYSRDICERLNLPLVRKQKSNRRLSVN
Ga0335085_10000313117	F018460	GGAGG	MLRKLIPVFALCLLTLPALCQSASKWQVASITEVKPHPAAGEDVADPVTYDVSVKVGDTIYLVRYSTPQGEIPPKYAAGHELLVLVGKTTITYNDMLGRSFQVPIESQKPASEPKQSK
Ga0335085_10000313118	F006672	AGGAGG	MRTADMLPGESNAQIISSIINLVCPQCGGRMSEFQCEGRCCRNWLAEWEWVNFAMRNPKSRPSKHAARSRR
Ga0335085_10000313129	F005435	GGA	MFCRSCASGNYRTFNGEVAVHFPGLAGLKKPIVWVFPKLLTCLDCGFTEFVIPNPELRRIHENATD
Ga0335085_10000313131	F075621	AGCAG	MAEQFHIRADWPVLVVEDTEDRISWFRQRLPNAVFTKNAEAAFQPLSQQEFKVAFLDHDLHWMHADNSIFKGTGKQNARYMAEHGFQGIVVIHSRHEEGAAAMKKFLPKAKLAPFGTFDIVSEENR
Ga0335085_10000313132	F031847	N/A	MQETITYLKKSYRGLAQEMSIPEMVLLDAVQGKLGLTRGQWLKLGQLLGLATTFDLRPSERIGTPCWEVCYAPIPSKSDDK
Ga0335085_1000031347	F001643	AGGAGG	MLAELTDIPTDTLFDMLYMVLAREVAITAADAAALEEIQRELQRRGGAPNWSFQTAAN
Ga0335085_1000031348	F020070	AGGAG	MHWQSTTDLKGGDLLPTRIPVRIIESHSQDGNRTLDKRSVEILGTDGHFEPYQDIDRETLQLDATTVRTVMRTFSEDVSGKKTLVQVTEEEKHMLAGDDSSTARVTYNPDVNGKLQPVQREIVESKKIGTDSEETKRTVMLTSINGGLAPAFKTREVRKVGDNNTEETEKTTWLPDVNGKWQVSEIRQNAATPESNGRKIEETVFRPDAEGKLSQISRVVSHEFESSSGDKGSSVETYSIDVPGTPQDGRLHLVERKNSLSHSSSAGEEKTEQRVEQVNPGDPNRGLRVSVLVDGKMVPGPAGEQASVTIRALDSNGNFGTVSVDMTQSDRIPTIQIQQTPPEQTK
Ga0335085_1000031373	F029198	GAGG	MENHSNSKAVRVNGEVIVLHCWACGTAHCVNLELCAPEELTHMVCSNSKCRMSMFLVNELVDDHISRQLTKNELIPRATHSRFWK
Ga0335085_1000031377	F001596	AGGAGG	MSWFHTSARAGDARNHASAAEIVACFRDQRNLLHGLAFLITADRATAEQAVAKACDITLQGNSPFRNWLLEWAKAVTISTAIALEGDTIRSCEAMYKDRHCPHVEHLCQFDDERRESKLALLFQLDAQKIFAELDPLCRAILVLRLAIRSSIQDCSLRLNVSRAAVLVANCQVMTWLDHSHVNPHRDDTNISQAF