Scaffold Ga0335085_10000311

Overview

Basic Information

• Taxon OID: 3300032770
• Scaffold ID: Ga0335085_10000311
• Source Dataset Name: Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 145244
• Total Scaffold Genes: 143
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 108 (75.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location

• Location Name: USA: Florida
• Coordinates
  • Lat. (^o): 26.5052
  • Long. (^o): -80.2345

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005275	Metagenome / Metatranscriptome	406	N
F012520	Metagenome / Metatranscriptome	280	N
F018957	Metagenome	232	Y
F048660	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_1000031113	F005275	N/A	VPIQPRQDQPRRLPRRPTPAARSLSGIEAASLVKFAYFTDAPPEAGTLLYTAFRRNMPPDVKEFTVKTPVTFFYGIQQTGGLLNIQVRWVNPDGVVVRTSDQPMDQSQEGALWTWQVDGLEKRDLSLAGVWAVELLISGHRVGRYPLLVRPAAR
Ga0335085_100003112	F018957	AGGTGG	MALLAGCATQQAAQSDCKMKWMGQPPIQVDSCTGRGEDLTPGWHWYDYVFGVPLGIVGFYDPASGGN
Ga0335085_1000031125	F012520	AGGTGG	MLVAYPWLVLFATGWIMGAVFVGAVGGTTRGVQGFFVWLLAALMFSPLLALLGLVAVLLGDLVREMEIKAIHGPDEILPPRRRSSGRFAHLAGEDD
Ga0335085_1000031126	F048660	GGAG	MKRASIGLGVLVTFFLLAMFLMADAEVQPVEDTPVLTSSSPAR