Scaffold Ga0335085

Basic Information
Taxon OID	3300032770 Open in IMG/M
Scaffold ID	Ga0335085_10000300 Open in IMG/M
Source Dataset Name	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032770 Open in IMG/M

Scaffold ID

Ga0335085_10000300 Open in IMG/M

Source Dataset Name

Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	148250
Total Scaffold Genes	125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	82 (65.60%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

148250

Total Scaffold Genes

125 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

82 (65.60%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location Name	USA: Florida
Coordinates	Lat. (^o)	26.5052	Long. (^o)	-80.2345	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Florida

Coordinates

Lat. (^o)

26.5052

Long. (^o)

-80.2345

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000882	Metagenome / Metatranscriptome	849	Y
F000883	Metagenome / Metatranscriptome	849	Y
F002831	Metagenome / Metatranscriptome	527	Y
F005790	Metagenome / Metatranscriptome	390	Y
F015624	Metagenome / Metatranscriptome	253	Y
F035041	Metagenome / Metatranscriptome	173	Y
F051484	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335085_10000300110	F035041	GGA	MAYDRLAAGKFREHKCADHLARIGLVVDDESFTARIRKLVSQGFKPKDAVELFLQEAALEFRNEPQTLARAKAEGEDFLRRVKAGLI
Ga0335085_10000300115	F005790	GGAGG	MFETNDLIEKTQWQKYALCFAAGCLVTTLISYVFVTPVVKRAAARSAEKAALQKLTAELEKNPVQAQLESTKADLQTAAQERDVCKARFDRQTILYDNSIAVDPQKIWIIPADVEPIVVGEHDVTYTHYDLKAKTETARFHPKRQ
Ga0335085_10000300118	F051484	GGA	MNTREEEPDSENSSNAKSSAQASAGQNSGGRVLLAAFSRPPEARGEDVNSSLVIAAEPVAAYPGLKEAPQYLGPLTEVAKAQGFTVDDEPYEMQIGTKVVVRGDFHKDVGSRVMRQSTLAFLAQGYAVSITVIAGTQDDVEELVDGVSFGAGK
Ga0335085_1000030012	F000882	N/A	MAQEILSVAIWEPLPDHEAAALETFHELTSIVASKGYGRDLLYRDGDQHYVFLRYWKSEDARGQAQEDPDMLRCWAKLGNEIRIVKVYETLTEA
Ga0335085_10000300124	F015624	N/A	MKAENRKIFDEEYRVLAVESQRLTIQGVRSGEVLTIHTENAESPLSAAEYPPGQLITLRDPSNALPN
Ga0335085_1000030051	F000883	GGAG	MSGQVVLYFEDQADALRFALAAGQVMAGEGAKYTSELVEETARVTRIRLDAANAGQVKRPDPGRVA
Ga0335085_1000030089	F002831	N/A	MPKSEQDAAHKHHRHAVYASETTGLLLIAVVLLVLTLIRYWREIHWSLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335085_10000300

Overview

Ecosystem & Geography

Associated Families

Sequences