NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335085_10000175

Scaffold Ga0335085_10000175


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000175 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)205413
Total Scaffold Genes170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)124 (72.94%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000299Metagenome / Metatranscriptome1341Y
F000414Metagenome / Metatranscriptome1169Y
F011872Metagenome / Metatranscriptome286Y
F025819Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000017526F011872N/AMAEQPTAKKDTLKIEKVSLLVLTLCIVALVYVLVAKPF
Ga0335085_100001756F025819N/AMRIPDFRPNFRNRHAPNSLAPPTPPANTYKMRNLSIFFALFICALATVSSAQDNRVFNWTPANSETIPLEPASLHGARVYRPAAGGGNMHVQIDSRYPVTVAMAYADEWNAAIQNPDSAPNFSFICVKEHVTNSIYECHLPSERPMIITFHDERKPQKPIVSTIGAVLGPQIRISPNDLHIQYFSWSCVNNCVLPCFGWRRILNEKYEITTVPKVYSLMTPDHDGQELNVKIKSPIPLTVALVPSHLADQVYDKSISLTAALDQTGCKERGVQSMSFHCSFNVANGTQTLLILPEMEFSGHKKATVEASTEKCIDHCDLLPPPPNQ
Ga0335085_1000017567F000414GGAGGMSAPSRRPEIRRRRTRKDKIHQLRKRLAAAKTDADRSRLTAKLHKLAVMSPGQPLLK
Ga0335085_1000017577F000299GGGGGMENLESSNGSFRPVDRYDIGHVQEVVRQAHDELRQLMQQRADIMKRIGTVKQTISGLANLFGDAVLNEELMELVDRKSNGRQPGFTKACRMILMESGRAMNSRDICDYFQEKMPALLARHKDPMASVTTVLNRLVDYGEAEAVVANGRRAWRWVADPAESAHAGAAAGLVA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.